View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_23 (Length: 416)
Name: NF3273_low_23
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 12165342 - 12165087
Alignment:
| Q |
14 |
aacaataccaacaactcatttgaagaaccaaataagagaaggctatgatgacaacaagacctagaatttaaatgcatgcacctagcaacaatttctacct |
113 |
Q |
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| T |
12165342 |
aacaataccaacaactcatttgaagaaccaaataagagaaggctatgatgacaacaagacctagaatttaaatgcatgcacctagcaacaatttctacct |
12165243 |
T |
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| Q |
114 |
cacnnnnnnngacctagttttcaatcttgctttttagtattatttggtggtgctagctatactactcaaggtcatgtttggctatcatgtgatttgaagt |
213 |
Q |
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| T |
12165242 |
cacaaaaaaagacctagttttcaatcttgctttttagtattatttggtggtgctagctatactactcaaggtcatgtttggctatcatgtgatttgaagt |
12165143 |
T |
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| Q |
214 |
gtgtcatgtggaggaggattgaagaaattttcannnnnnnacttactatagaaaaa |
269 |
Q |
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| T |
12165142 |
gtgtcatgtggaggaggattgaagaaattttcatttttttacttactatagaaaaa |
12165087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 264 - 401
Target Start/End: Complemental strand, 12164762 - 12164625
Alignment:
| Q |
264 |
gaaaaagagaaagagtgctggttggttgattggaagcaaaccaaactgagtcccacattccttttggaatattggtggatgggacagaaagctgaggaac |
363 |
Q |
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| T |
12164762 |
gaaaaagagaaagagtgctggttggttgattggaagcaaaccaaactgagtcccacattccttttggaatattggtggatgggacagaaagctgaggaac |
12164663 |
T |
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| Q |
364 |
agaaggttgcaatagttgcaacaagtacatttcactat |
401 |
Q |
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| T |
12164662 |
agaaggttgcaatagttgcaacaagtacatttcactat |
12164625 |
T |
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