View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_24 (Length: 407)
Name: NF3273_low_24
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 43625336 - 43624967
Alignment:
| Q |
18 |
accattatctaattctatgtattaggaagtgaactttcttaattcactcccaatctgttcatgttattcacagttgttacgatataacttacgttacttg |
117 |
Q |
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| T |
43625336 |
accattatctaattctatgtattaggaagtgaactttcttaattcactcccaatctgttcatgttattcacagttgttacgatataacttacgttacttg |
43625237 |
T |
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| Q |
118 |
gggttaagttctatattattgatttatttctatttcgtcgtattaatgtccaccacatgttatttttaatgtcaaattgtgtcttcataatctgaaattg |
217 |
Q |
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| T |
43625236 |
gggttaagttctatattatt--------tctatttcgtcgtattaatgtccaccacatgttatttttaatgtcaaattgtgtcttcataacctgaaattg |
43625145 |
T |
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| Q |
218 |
gggatcacaaatcagcaactcacgcggggtataacacctgcatgattgtgtacacagcctcttctgacgatccctgaaagtcagaatattcactgtcaac |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| ||||||| |
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| T |
43625144 |
gggatcacaaatcagcaacttacgcggggtataacacctgcatgattgtgtacatagcctcttc-gacgatccctgagagtcagaatattcagtgtcaac |
43625046 |
T |
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| Q |
318 |
atacccccaatataaaggatccacggtacacatcatatccctttggtcccttgcctttatccttcttcactcatcctttg |
397 |
Q |
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| T |
43625045 |
atgcccccaatatgaaggat-cacggtacacatcatatccctctggtcccttgcctttatccttcttcactcatcctttg |
43624967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 35901290 - 35901352
Alignment:
| Q |
75 |
ttcatgttattcacagttgttacgatataacttacgttacttggggttaagttctatattatt |
137 |
Q |
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| T |
35901290 |
ttcatgttattcacagttgttacgatataacttactttacttggggttaagttctatattatt |
35901352 |
T |
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