View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_25 (Length: 406)
Name: NF3273_low_25
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 40768130 - 40767742
Alignment:
| Q |
1 |
cgctgctagacggtctgaagaaggaggttccttgcatttcaaagctctataaatactttttccggattcagcgaggcgagcggcgagtccctccaccata |
100 |
Q |
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| T |
40768130 |
cgctgctagacggtccgaagaaggaggttccttgcatttcaaagctctataaatactttttccggattcagcgaggcgagcggcgagtccctccaccata |
40768031 |
T |
|
| Q |
101 |
taggctgcaattctttgggaaggctctccttgaattgagacaattcgtcggagattgtttatcattgacgatgcttcctcttcatttccttctgaaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40768030 |
taggctgcaattctttgggaaggctctccttgaattgagacaattcgtcggagattgtttatcattgacgatgcttcctcttcatttccttctgaaattg |
40767931 |
T |
|
| Q |
201 |
cagtagcacattcataaagaagttgcttgggggtcctagaaatttttgttatttctttggtggtgctactgatgctgctaatattggaatctggagacga |
300 |
Q |
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| T |
40767930 |
cagtagcacattcataaagaagttgcttgggggtcctagaaatttttgttatttctttggtggtgctactgatgctgctaatattggaatctggagacga |
40767831 |
T |
|
| Q |
301 |
atactcctttggtgagtcatggtcatggaacagcagcatattctgaattggatcaggatcagcccaatcaataatgttaggatcaattt |
389 |
Q |
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| T |
40767830 |
atactcctttggtgagtcatggtcatggaacagcagcatattctgaattggatcaggatcagcccaatcaataatgttaggatcaattt |
40767742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 293
Target Start/End: Original strand, 10093649 - 10093940
Alignment:
| Q |
2 |
gctgctagacggtctgaagaaggaggttccttgcatttcaaagctctataaatactttttccggattcagcgaggcgagcggcgagtccctccaccatat |
101 |
Q |
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||||||||||| || ||||| |||||||||||||||||||||||| ||||||||| |||||| ||| ||| | ||||| || ||||| |||||||| | |
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| T |
10093649 |
gctgctagacgatcagaagacggaggttccttgcatttcaaagctttataaatacattttcccgatgaagccaaacgagcagcaagtccttccaccatgt |
10093748 |
T |
|
| Q |
102 |
aggctgcaattctttgggaaggctctccttgaattgagacaattcgtcggagattgtttatcattgacgatgcttcctcttcatttccttctgaaattgc |
201 |
Q |
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||||||||||||| | ||||| ||||| |||||||| || | | | ||||| | ||||| | || |||| |||||||||||||||||| ||| |
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| T |
10093749 |
aggctgcaattctatccgaaggttctccctgaattgaaaccaactgcctgagatcatcgatcatagctgaggcttttacttcatttccttctgaaagtgc |
10093848 |
T |
|
| Q |
202 |
agtagcacattcataaagaagttgcttgggggtccta-gaaatttttgt--tatttctttggtggtgctactgatgctgctaatattggaatctg |
293 |
Q |
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||||||||||||| || | |||||| ||||||| | |||| |||||| |||||||| ||||||||||| |||| |||| ||| ||||||| |
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| T |
10093849 |
gctagcacattcatatagtaattgcttcggggtccgaggaaagttttgtgatatttctt---tggtgctactggtgctactaagatttgaatctg |
10093940 |
T |
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