View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_26 (Length: 404)
Name: NF3273_low_26
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 4608866 - 4608496
Alignment:
| Q |
18 |
tgttttgcaaaactccatcttctcttctcctttttgatgtcaggtgtcaatgaacctgaattaatgtcactgtggtccttctctttctccttcttcttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4608866 |
tgttttgcaaaactccatcttctcttctcctttttgatgtcaggtgtcaatgaacctgaattgatgtcactgtggtccttctctttctccttcttcttgt |
4608767 |
T |
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| Q |
118 |
ttcctaacaaactcttaaaccatctactagcttttcccataactacttcttcacaagcaagaatctgaagtgtgagtgaatgagaaaaactatgtcaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4608766 |
ttcctaacaaactcttaaaccatctactagcttttcccataactacttcttcacaagcaagaatctgaagtgtgagtgaatgagaaaaactatgtcaaat |
4608667 |
T |
|
| Q |
218 |
gttgaataaacgcaatacgagggaatttggtaaaatttaaaaagagagagtgtggaatgacaaaacaagtggagtttagtgcaaaaatctaaagaatcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4608666 |
gttgaataaacgcaatacgagggaatttggtaaaattt-aaaagagagagtgtggaatgacaaaacaagtggagtttagtgcaaaaatctaaagaatcta |
4608568 |
T |
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| Q |
318 |
aacattaaggaaaatattattcaataccagataagtgctcaatagacaaacggtggtaaaatactaaaaatt |
389 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4608567 |
aacattaaggaaaatattattcaataccaaataagtgctcaatagacaaacggtggtaaaatactaaaaatt |
4608496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 43315591 - 43315632
Alignment:
| Q |
118 |
ttcctaacaaactcttaaaccatctactagcttttcccataa |
159 |
Q |
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|||| ||||||| ||| ||||||||||||||||||||||||| |
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| T |
43315591 |
ttccaaacaaacccttcaaccatctactagcttttcccataa |
43315632 |
T |
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