View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_28 (Length: 395)
Name: NF3273_low_28
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 28431224 - 28430864
Alignment:
| Q |
19 |
atttcagtgtaaggctaagagccacaacaacagatcataatcacacctgctcatatacagggaaagatatccattcaggtaaattttcaccacaaatttt |
118 |
Q |
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| T |
28431224 |
atttcagtgtaaggctaagagccacaacaacagatcataatcacacctgctcatatacagggaaagatatccattcaggtaaattttcaccacaaatttt |
28431125 |
T |
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| Q |
119 |
ctttaagtcgtctctattaagggatccaaggagtttaatgtcaactgcctgcagggaaaaatgaataatgttaagacaagaagaaaaaatatatccacaa |
218 |
Q |
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| T |
28431124 |
ctttaagtcgtctctattaagggatccaaggagtttaatgtcaactgcctgcagggaaaaatgaataatgttaagacaagaagaaaaaatatatccacaa |
28431025 |
T |
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| Q |
219 |
attaatacatgtcatttcatttgttaaataaaatggccacagctcacacaataataaattgttgttagcactgtagtatttaagtctactaggtttccct |
318 |
Q |
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| T |
28431024 |
attaatacatgtcatttcatttgttaaataaaatggccacagctcacacaataataaattgttgttagcactgtagtatttaagtctactaggtttccct |
28430925 |
T |
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| Q |
319 |
tttcatttccctgtttttcttgtcttcttcctgtgaatagattctcttgaataatgccaca |
379 |
Q |
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| T |
28430924 |
tttcatttccctgtttttcttgtcttcttcctgtgaatagattctcttgaataatgccaca |
28430864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 62 - 168
Target Start/End: Original strand, 12973550 - 12973656
Alignment:
| Q |
62 |
cacctgctcatatacagggaaagatatccattcaggtaaattttcaccacaaattttctttaagtcgtctctattaagggatccaaggagtttaatgtca |
161 |
Q |
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| T |
12973550 |
cacctgctcatatacaggaaaagatatccattcaggaagattctccccacaaattttctttaaatcttctctgttgagggatccaaggattttgatgtca |
12973649 |
T |
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| Q |
162 |
actgcct |
168 |
Q |
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| T |
12973650 |
acagcct |
12973656 |
T |
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