View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_3 (Length: 684)
Name: NF3273_low_3
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 4286626 - 4286173
Alignment:
| Q |
19 |
caaacaggtggtcataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacac |
118 |
Q |
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| T |
4286626 |
caaacaggtggtcataaataaatgttgctgtttattaaaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacac |
4286527 |
T |
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| Q |
119 |
caagtaggcaagtagatttcttagataatatcagtcttatgtccttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtattt |
218 |
Q |
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| T |
4286526 |
caagtaggcaagtagatttcttagataatatcagtcttatgtctttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtattt |
4286427 |
T |
|
| Q |
219 |
gcttgcagatgagacctctatcgaacttgtagaacatggtactgttatgcccagtgaaaattgaacagacctctacttttatgtgannnnnnnnngctaa |
318 |
Q |
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| T |
4286426 |
gcttgcagatgagacctctatcgaactagtagaacatggtactgttatgcccggtgaaaattgaacagacctctacgtttatgtgattcttttttgctaa |
4286327 |
T |
|
| Q |
319 |
ggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagttcaatatacccagattgat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4286326 |
ggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagttcaatataccgagattgat |
4286227 |
T |
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| Q |
419 |
ttttatcaaaaaacttgaatgctctatggaggtgtatattattctcagacgaat |
472 |
Q |
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| T |
4286226 |
ttttatcaaaaaacttgaatgctctatggaggtgtatatcattctcagatgaat |
4286173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 484 - 664
Target Start/End: Complemental strand, 4284670 - 4284495
Alignment:
| Q |
484 |
tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag |
583 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
4284670 |
tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag |
4284576 |
T |
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| Q |
584 |
tttcgcagttcacattttcgcggttcactggttttacagttgaaacttggaatgcttcattccttcgagaatttgcagttc |
664 |
Q |
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| T |
4284575 |
tttcgcagttcacattttcgcggttcactggttttgcagttgaaacttggaatgcttcattccttcgagaatttgcagttc |
4284495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 453
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
| Q |
391 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
453 |
Q |
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| T |
21387149 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
21387211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 17165498 - 17165434
Alignment:
| Q |
92 |
tgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtctt |
156 |
Q |
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|||||||||||||||||||| |||||| || ||| ||||||||||| | |||||| ||| |||| |
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| T |
17165498 |
tgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatctt |
17165434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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