View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_30 (Length: 373)
Name: NF3273_low_30
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 5 - 373
Target Start/End: Original strand, 29987271 - 29987644
Alignment:
| Q |
5 |
acatcaaagaagtagaggtagttgaagggggatgcttagatcttggattcacactatttagagttcgtatggaagtgatagagaaaggtaaagattcaag |
104 |
Q |
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| T |
29987271 |
acatcaaagaagtagaggtagttgaagggggatgcttagatcttggattcacactatttagagttcgtatggaagtgatagagaaaggtaaagattcaag |
29987370 |
T |
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| Q |
105 |
cataatcaaaactacattagagtatgaagtcaaggaagaggaagcagccaatgtcgcacttgcttccatccaacaattggcagagattgtagaagttggc |
204 |
Q |
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| T |
29987371 |
cataatcaaaactacattagagtatgaagtcaaggaagaggaagcagccaatgtcgcacttgcttccatccaacaattggcagagattgtagaagttggc |
29987470 |
T |
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| Q |
205 |
aagaattacctcaacagaaacaaggatgcaaaagaagtaaagta-----ctatgtgcttcaaaactaaactagagaaaacaaaaacttatggcttaggac |
299 |
Q |
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| T |
29987471 |
aagaattacctcaacagaaacaaggatgcaaaagaagtaaagtagtaatttatgtgcttcaaaactaaactagagaaaacaaaaacttatggcttaggtc |
29987570 |
T |
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| Q |
300 |
atgaataaaatgatgaaagttgccttgctaccaagattttgtttcattcattcacatcatcgtgtattattttt |
373 |
Q |
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| T |
29987571 |
atgaataaaatgatgaaagttgctttgctaccaagattttgtttcattaattcacatcatcgtgtatttttttt |
29987644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 29991877 - 29992109
Alignment:
| Q |
19 |
gaggtagttgaagggggatgcttagatcttggattcacactatttagagttcgtatggaagtgatagagaaaggtaaaga---ttcaagcataatcaaaa |
115 |
Q |
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| T |
29991877 |
gaggtagttgaaggtggatacttagaatttggattcacactatttagagttcgttttgaaataattgagaaaggtgaagaatattcaagcataatcaaaa |
29991976 |
T |
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| Q |
116 |
ctacattagagtatgaagtcaaggaagaggaagcagccaatgtcgcacttgcttccatccaacaattggcagagattgtagaagttggcaagaattacct |
215 |
Q |
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| T |
29991977 |
ctacaatagagtatgaaatcaaggaagagcatgcagccaatgcctcatttgtttccattgagccattggctaacattatggaagttgccaagaattacct |
29992076 |
T |
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| Q |
216 |
caacagaaacaaggatgcaaaagaagtaaagta |
248 |
Q |
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| T |
29992077 |
caacagaaacaaggcttcaaaagaagcaaagta |
29992109 |
T |
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