View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_31 (Length: 370)
Name: NF3273_low_31
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 40415881 - 40416235
Alignment:
| Q |
1 |
aagtttccccactccatgctaattacctgcaacattatatcatgaaatttaagattttatatnnnnnnntgagaccatcaaagatagttgggatgaattg |
100 |
Q |
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| T |
40415881 |
aagtttccccactccatgctaattacctgcaacattatatcatgaaatttaagattttatataaaaaaatgagaccatcaaagatagttgggatgaattg |
40415980 |
T |
|
| Q |
101 |
ttccagagaaattaagttcgaattctggttgaaacaatcttaattaaactttatttacctcccgagttctatattcactaaaatcccattccccttaaaa |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
40415981 |
ttccagagaaattaagtttgaattctggttgaaacaatcttaattaaactttatttacctcccgaattctatattcactaaaatcccattcccctgaaaa |
40416080 |
T |
|
| Q |
201 |
ccggatggtttagataagtggttcttttgttctcgnnnnnnnnnnnnnnnnnnnnnnngcgtaaaaaacaatgtaaagactatggcagtcactaacaagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40416081 |
ccggatggtttagataagtggttcttttgttctcgttttttgatatattttttcttttgcgtaaaaaacaatgtaaagactatggcagtcactaaccagt |
40416180 |
T |
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| Q |
301 |
tcatttgaattgggagatcgtgcaagctcactttcttgtgctggttcaacataag |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40416181 |
tcatttgaattgggagatcgtgcaagctcactttcttgtgctggttcaacataag |
40416235 |
T |
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