View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_36 (Length: 359)
Name: NF3273_low_36
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 14490159 - 14490497
Alignment:
| Q |
16 |
catttgaagtttgaaaatttcatatatttttctgaagttagtaaacttacatatataatcacaattcaactggttccatattaaaatttgaagacaataa |
115 |
Q |
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| T |
14490159 |
catttgaagtttgaaaatttcatatatttttctgaagttagtaaacttacatat--aatcacaattcaactggttccatattaaaatttgaagacaataa |
14490256 |
T |
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| Q |
116 |
attatgaaaattcacgcactgtaactgttttaagtagtaactttcagaatttcatgtttcttttgaaaatctctctcaaacctaaacatgtcaaaaacat |
215 |
Q |
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| T |
14490257 |
attatgaaaattcacgcactgtaactgttttaagtagtaactttcagaatttcatgtttcttttgaaaatctctctcaaacctaaacaagtcaaaaacat |
14490356 |
T |
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| Q |
216 |
catacaacaaatcatttatcattaacaaattattccacccaattaaagatcaatacaagagattttccttcaaaatcatataacacaaaagaatcataaa |
315 |
Q |
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| T |
14490357 |
catacaacaaatcatttatcattaacaaattattccacccaattaaagatcaatacaagagattttccttcaaaatcatataacacaaaagaatcataaa |
14490456 |
T |
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| Q |
316 |
aataaggcatgtccatataattctactctctcactattctt |
356 |
Q |
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| T |
14490457 |
aataaggcatgtccatataattctactctctcactattctt |
14490497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 44510467 - 44510405
Alignment:
| Q |
249 |
tccacccaattaaagatcaatacaagagattttccttcaaaatcatataacacaaaagaatca |
311 |
Q |
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| T |
44510467 |
tccacccaattgaagatcaacacaagagatttcccttcaaaatcatataacacagtagaatca |
44510405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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