View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_37 (Length: 329)

Name: NF3273_low_37
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_37
NF3273_low_37
[»] scaffold0393 (2 HSPs)
scaffold0393 (187-329)||(11172-11314)
scaffold0393 (172-208)||(11331-11367)
[»] chr8 (23 HSPs)
chr8 (187-329)||(38521229-38521371)
chr8 (199-329)||(1668091-1668221)
chr8 (199-329)||(16658806-16658936)
chr8 (209-329)||(22432294-22432418)
chr8 (209-329)||(29182578-29182702)
chr8 (199-325)||(6786423-6786550)
chr8 (209-329)||(27576755-27576885)
chr8 (209-329)||(774683-774808)
chr8 (238-329)||(22014860-22014951)
chr8 (218-329)||(11472358-11472476)
chr8 (205-296)||(43916093-43916184)
chr8 (233-329)||(42808687-42808783)
chr8 (233-325)||(33360397-33360489)
chr8 (277-329)||(780365-780417)
chr8 (210-269)||(34212961-34213020)
chr8 (172-208)||(1668023-1668059)
chr8 (172-208)||(16658738-16658774)
chr8 (169-208)||(22014748-22014787)
chr8 (136-171)||(38521442-38521477)
chr8 (172-208)||(38521388-38521424)
chr8 (169-208)||(774857-774896)
chr8 (169-208)||(780511-780550)
chr8 (140-171)||(16658689-16658720)
[»] chr4 (23 HSPs)
chr4 (199-329)||(13740255-13740385)
chr4 (199-329)||(45143958-45144088)
chr4 (199-329)||(45152727-45152857)
chr4 (199-329)||(23218223-23218353)
chr4 (199-329)||(21355853-21355983)
chr4 (209-329)||(21604418-21604542)
chr4 (209-329)||(46164369-46164493)
chr4 (209-329)||(47825900-47826024)
chr4 (225-328)||(54785192-54785295)
chr4 (225-329)||(8432983-8433087)
chr4 (123-208)||(21355727-21355812)
chr4 (218-325)||(38115443-38115557)
chr4 (200-323)||(33753972-33754095)
chr4 (136-208)||(13740417-13740488)
chr4 (233-329)||(14800000-14800096)
chr4 (172-208)||(23218385-23218421)
chr4 (136-171)||(23218439-23218474)
chr4 (136-171)||(45143837-45143872)
chr4 (136-171)||(45152606-45152641)
chr4 (172-208)||(45143890-45143926)
chr4 (172-208)||(45152659-45152695)
chr4 (169-208)||(54785364-54785403)
chr4 (272-329)||(3187589-3187646)
[»] chr3 (12 HSPs)
chr3 (172-329)||(21239391-21239551)
chr3 (199-329)||(52893417-52893547)
chr3 (199-329)||(2338819-2338947)
chr3 (225-329)||(9456426-9456530)
chr3 (233-328)||(40922976-40923071)
chr3 (233-328)||(2733793-2733888)
chr3 (172-208)||(2338979-2339015)
chr3 (136-171)||(2339033-2339068)
chr3 (136-171)||(21239338-21239373)
chr3 (172-208)||(52893349-52893385)
chr3 (210-269)||(4329855-4329916)
chr3 (1-29)||(54629920-54629948)
[»] chr2 (10 HSPs)
chr2 (205-329)||(3935375-3935499)
chr2 (199-323)||(38978382-38978506)
chr2 (209-329)||(25697570-25697694)
chr2 (273-323)||(32339602-32339652)
chr2 (172-208)||(3935537-3935573)
chr2 (136-171)||(38978592-38978627)
chr2 (216-257)||(8485531-8485572)
chr2 (210-262)||(20917027-20917079)
chr2 (140-171)||(3935591-3935622)
chr2 (176-208)||(38978538-38978570)
[»] chr5 (9 HSPs)
chr5 (209-329)||(3174156-3174280)
chr5 (209-329)||(32863640-32863760)
chr5 (209-329)||(10572695-10572819)
chr5 (205-329)||(19209115-19209239)
chr5 (205-329)||(23737874-23737998)
chr5 (227-329)||(43300188-43300290)
chr5 (212-325)||(41958605-41958717)
chr5 (233-328)||(22273148-22273243)
chr5 (282-325)||(18739410-18739453)
[»] scaffold1160 (3 HSPs)
scaffold1160 (199-329)||(2453-2577)
scaffold1160 (169-208)||(2382-2421)
scaffold1160 (136-171)||(2324-2359)
[»] chr7 (7 HSPs)
chr7 (209-329)||(6472247-6472371)
chr7 (209-329)||(9371799-9371923)
chr7 (209-329)||(21358025-21358149)
chr7 (209-328)||(35012978-35013101)
chr7 (212-329)||(44660309-44660425)
chr7 (233-320)||(31419280-31419367)
chr7 (210-269)||(12003038-12003099)
[»] chr1 (13 HSPs)
chr1 (209-329)||(29599254-29599378)
chr1 (209-329)||(324671-324795)
chr1 (210-329)||(17480990-17481109)
chr1 (209-329)||(48184231-48184349)
chr1 (209-329)||(26354997-26355122)
chr1 (250-325)||(26014504-26014579)
chr1 (238-322)||(6165049-6165133)
chr1 (238-322)||(16764537-16764621)
chr1 (240-322)||(10801568-10801650)
chr1 (169-208)||(6165206-6165245)
chr1 (169-208)||(16764694-16764733)
chr1 (169-208)||(10801726-10801765)
chr1 (172-208)||(26354912-26354948)
[»] chr6 (5 HSPs)
chr6 (209-329)||(32397224-32397349)
chr6 (208-304)||(9303000-9303095)
chr6 (233-328)||(7171047-7171142)
chr6 (210-269)||(14654645-14654704)
chr6 (210-269)||(32397747-32397808)
[»] scaffold1084 (1 HSPs)
scaffold1084 (218-325)||(1208-1319)
[»] scaffold0285 (2 HSPs)
scaffold0285 (238-322)||(8383-8467)
scaffold0285 (169-208)||(8540-8579)
[»] scaffold0054 (2 HSPs)
scaffold0054 (238-322)||(2888-2972)
scaffold0054 (169-208)||(2776-2815)
[»] scaffold1300 (1 HSPs)
scaffold1300 (218-329)||(925-1043)
[»] scaffold0005 (1 HSPs)
scaffold0005 (233-329)||(39631-39727)


Alignment Details
Target: scaffold0393 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 187 - 329
Target Start/End: Complemental strand, 11314 - 11172
Alignment:
Q  187 gccgcgaccactctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaa 286  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11314 gccgcgattactctcctccttcagtttagagagctatctccatctctctccacaaatcctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaa 11215  T
Q  287 tttccttcaattatgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11214 tttccttcaattatgattatgatttgatgattacatgttcttt 11172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 11367 - 11331
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||| |||||||||||||||||| |||||||||    
T  11367 caccaccgacggtgagccgcgaccactttcctccttc 11331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 187 - 329
Target Start/End: Complemental strand, 38521371 - 38521229
Alignment:
Q  187 gccgcgaccactctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaa 286  Q
    |||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38521371 gccgcgattactctcctccttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaa 38521272  T
Q  287 tttccttcaattatgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38521271 tttccttcaattatgattatgatttgatgattacatgttcttt 38521229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 1668091 - 1668221
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668091 ctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 1668190  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||||    
T  1668191 atgattatgatttgatgattacatgttcttt 1668221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 16658806 - 16658936
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658806 ctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 16658905  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||||    
T  16658906 atgattatgatttgatgattacatgttcttt 16658936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 22432418 - 22432294
Alignment:
Q  209 agtttagagagctatctccatc----tctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22432418 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 22432319  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  22432318 ctgatttgatgattacatgttcttt 22432294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 29182702 - 29182578
Alignment:
Q  209 agtttagagagctatctccatc----tctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29182702 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 29182603  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  29182602 ctgatttgatgattacatgttcttt 29182578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 325
Target Start/End: Original strand, 6786423 - 6786550
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaa-ttgaatgtaatttccttcaat 297  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||    
T  6786423 ctccttcttcagttttgaaagctatctccatctctctccacaaaccctaattgctgtaacttgtaaggtaatgtgaaatttgaatgtaacttccttcaat 6786522  T
Q  298 tatgattatgatttgatgattacatgtt 325  Q
    | ||||| ||||||||||||||||||||    
T  6786523 tctgattttgatttgatgattacatgtt 6786550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 27576755 - 27576885
Alignment:
Q  209 agtttagagagctatctcca----tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttca------att 298  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||    
T  27576755 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 27576854  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
     ||||| ||||||||||||||||||||||||    
T  27576855 ctgattctgatttgatgattacatgttcttt 27576885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 774808 - 774683
Alignment:
Q  209 agtttagagagctatctccatc--tc--tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaa-ttgaatgtaatttccttcaattatgat 303  Q
    ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  774808 agtttagagagctatctccatccatccttctccacaaaccctaattgttgtaacttataaggtaatgtgaaatttgaatgtaatttccttcaattctgat 774709  T
Q  304 tatgatttgatgattacatgttcttt 329  Q
    | |||| |||| ||||||||||||||    
T  774708 tctgatatgataattacatgttcttt 774683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 22014860 - 22014951
Alignment:
Q  238 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  22014860 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaatttccttcaattatgattattgtttgatgattacatattcttt 22014951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 11472476 - 11472358
Alignment:
Q  218 agctatctccatctctctccaca---aaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttca----attatgattatgatt 310  Q
    |||||||| ||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    ||||||||| ||||     
T  11472476 agctatcttcatctctctccacagaaaaccctaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttccttcaattaattatgattctgata 11472377  T
Q  311 tgatgattacatgttcttt 329  Q
    |||||||||||||||||||    
T  11472376 tgatgattacatgttcttt 11472358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 43916093 - 43916184
Alignment:
Q  205 cttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaa 296  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |||||||| || |||||||||||||||||    
T  43916093 cttcagtttagagagctatctccatctctctccataaaccctgattgttgtaaattgtaaggaaatgtgaattttaatgtaatttccttcaa 43916184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 42808687 - 42808783
Alignment:
Q  233 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||| |||||| ||| |||||||| |||||||||||||| |||||||||| |||||||||  | |||||||||||||||||||    
T  42808687 tctccacaaaccctaattcttgtaaattgcaaggtaatatgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttcttt 42808783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 33360397 - 33360489
Alignment:
Q  233 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgtt 325  Q
    |||||||||||||||||| | |||| ||| ||| |||| |||||||||||||| |||||||||| |||||||||  | |||||||||||||||    
T  33360397 tctccacaaaccctaattctggtaaattgcaagttaatatgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgtt 33360489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 780417 - 780365
Alignment:
Q  277 ttgaatgtaatttccttcaattatgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  780417 ttgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttt 780365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 34213020 - 34212961
Alignment:
Q  210 gtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 269  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||| |||||||||||    
T  34213020 gtttaaagagctatctccatctctctccacaaaccctagttcttgtaaattgtaaggtaa 34212961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 1668023 - 1668059
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||||||||||||||||||    
T  1668023 caccaccgccggtgagccgcgaccactctcctccttc 1668059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 16658738 - 16658774
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||||||||||||||||||    
T  16658738 caccaccgccggtgagccgcgaccactctcctccttc 16658774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 22014748 - 22014787
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  22014748 ccacaccaccgctggtgagccgcgaccactctcctccttc 22014787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 38521477 - 38521442
Alignment:
Q  136 agaacaagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||||||    
T  38521477 agaacaagtgagaaacgcgatccttttcttctccca 38521442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 38521424 - 38521388
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    ||||||||||||||||||||||||||||| |||||||    
T  38521424 caccaccgccggtgagccgcgaccactcttctccttc 38521388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 774896 - 774857
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  774896 ccacaccaccgccggcgaaccgcgaccactctcctccttc 774857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 780550 - 780511
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  780550 ccacaccaccgccggcgaaccgcgaccactctcctccttc 780511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 171
Target Start/End: Original strand, 16658689 - 16658720
Alignment:
Q  140 caagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||    
T  16658689 caagtgagaaacgcgatccttttcttctccca 16658720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 199 - 329
Target Start/End: Complemental strand, 13740385 - 13740255
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13740385 ctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 13740286  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||||    
T  13740285 atgattatgatttgatgattacatgttcttt 13740255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 45143958 - 45144088
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45143958 ctcctccttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 45144057  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||||    
T  45144058 atgattatgatttgatgattacatgttcttt 45144088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 45152727 - 45152857
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45152727 ctcctccttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 45152826  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||||    
T  45152827 atgattatgatttgatgattacatgttcttt 45152857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 199 - 329
Target Start/End: Complemental strand, 23218353 - 23218223
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23218353 ctccttcttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 23218254  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||||    
T  23218253 atgattatgatttgatgattacatgttcttt 23218223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 21355853 - 21355983
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21355853 ctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaacgtgaaattgaatgtaatttccttcaatt 21355952  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
     ||||| ||||||||||||||||||||||||    
T  21355953 ctgattctgatttgatgattacatgttcttt 21355983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 21604418 - 21604542
Alignment:
Q  209 agtttagagagctatctcca----tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21604418 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 21604517  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  21604518 ctgatttgatgattacatgttcttt 21604542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 46164493 - 46164369
Alignment:
Q  209 agtttagagagctatctccatc----tctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46164493 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 46164394  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  46164393 ctgatttgatgattacatgttcttt 46164369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 47825900 - 47826024
Alignment:
Q  209 agtttagagagctatctcca----tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47825900 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 47825999  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  47826000 ctgatttgatgattacatgttcttt 47826024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 54785295 - 54785192
Alignment:
Q  225 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgt 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54785295 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattctgatttgatgattacatgt 54785196  T
Q  325 tctt 328  Q
    ||||    
T  54785195 tctt 54785192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 8433087 - 8432983
Alignment:
Q  225 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgt 324  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  8433087 tccatctctctccacaaaccctaattgttgttacttgtaaggtaatgtgaaattgaatgttatttccttcaattctgattctgatttgatgattacatgt 8432988  T
Q  325 tcttt 329  Q
    |||||    
T  8432987 tcttt 8432983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 21355727 - 21355812
Alignment:
Q  123 tttaggctgctgtagaacaagtgagaaacgcgatccttttcttctcccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21355727 tttaggctgctgtagaacaagtgagaaacgcgatccttttcttctcccacaccaccgcgggtgagccgcgaccactctcctccttc 21355812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 218 - 325
Target Start/End: Original strand, 38115443 - 38115557
Alignment:
Q  218 agctatctccatctctctccacaa---accctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc----aattatgattatgatt 310  Q
    |||||||| |||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||| ||||     
T  38115443 agctatcttcatctctctccacaacaaaccctaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttccttcaattaattatgattctgata 38115542  T
Q  311 tgatgattacatgtt 325  Q
    |||||||||||||||    
T  38115543 tgatgattacatgtt 38115557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 323
Target Start/End: Complemental strand, 33754095 - 33753972
Alignment:
Q  200 tcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggt-aatgtgaa--attgaatgtaatttccttcaa 296  Q
    |||| ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||   |||| || ||  ||||  |||||||||||||| ||||||    
T  33754095 tccttcttcagttttgagagttatctccatctctttccacaaaccctaattgttgtaa---gtaatgtgaaattgaaatattgaatgtaattttcttcaa 33753999  T
Q  297 ttatgattatgatttgatgattacatg 323  Q
    |||||||| ||||||||||||||||||    
T  33753998 ttatgattttgatttgatgattacatg 33753972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 13740488 - 13740417
Alignment:
Q  136 agaacaagtgagaaacgcgatccttttcttctcccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||  ||||||||||||||||||||||||||    
T  13740488 agaacaagtgagaaacgcgatccttttcttctccca-accaaagcaagtgagccgcgaccactctcctccttc 13740417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 14800096 - 14800000
Alignment:
Q  233 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||| |||||| ||  |||||||| ||||||| |||||| |||||||||| |||||||||  | |||||||||| ||||||||    
T  14800096 tctccacaaaccctaatttttgtaaatttcaaggtaatatgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttcttt 14800000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 23218421 - 23218385
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||||||||||||||||||    
T  23218421 caccaccgccggtgagccgcgaccactctcctccttc 23218385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 23218474 - 23218439
Alignment:
Q  136 agaacaagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||||||    
T  23218474 agaacaagtgagaaacgcgatccttttcttctccca 23218439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 45143837 - 45143872
Alignment:
Q  136 agaacaagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||||||    
T  45143837 agaacaagtgagaaacgcgatccttttcttctccca 45143872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 45152606 - 45152641
Alignment:
Q  136 agaacaagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||||||    
T  45152606 agaacaagtgagaaacgcgatccttttcttctccca 45152641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 45143890 - 45143926
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||| ||||||||||||||    
T  45143890 caccaccgccggtgagccgcgatcactctcctccttc 45143926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 45152659 - 45152695
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||| ||||||||||||||    
T  45152659 caccaccgccggtgagccgcgatcactctcctccttc 45152695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 54785403 - 54785364
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  54785403 ccacaccaccgccggcgagccgcaaccactctcctccttc 54785364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 3187646 - 3187589
Alignment:
Q  272 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||||||||||||||||    
T  3187646 tgaaattgaatgtattttcctttaaatctgattcttctttgatgattacatgttcttt 3187589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 172 - 329
Target Start/End: Original strand, 21239391 - 21239551
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc---agtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggta 268  Q
    |||||||||||||||||||||| ||||||||| ||||   |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21239391 caccaccgccggtgagccgcgatcactctccttcttcttcagtttagaaagctatctccgtctctctccacaaaccctaattgttgtaacttgtaaggta 21239490  T
Q  269 atgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21239491 atgtgaaattgaatgtaatttccttcaattctgattatgatttgatgattacatgttcttt 21239551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 52893417 - 52893547
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52893417 ctccttcttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 52893516  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||||||||    
T  52893517 atgattatgatttgatgattacatgttcttt 52893547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 199 - 329
Target Start/End: Complemental strand, 2338947 - 2338819
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338947 ctccttcttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 2338848  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
    ||||||||||||||   ||||||||||||||    
T  2338847 atgattatgatttg--tattacatgttcttt 2338819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 9456426 - 9456530
Alignment:
Q  225 tccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgt 324  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  9456426 tccatctctctccacaaaccctaattgttgtaacttgaaaggtaatgtgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgt 9456525  T
Q  325 tcttt 329  Q
    |||||    
T  9456526 tcttt 9456530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 40922976 - 40923071
Alignment:
Q  233 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctt 328  Q
    |||||||||||||||||| |||||| ||| ||||||||  ||||||||||||| |||||||||| |||||||||  | ||||||||||||||||||    
T  40922976 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttctt 40923071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 2733793 - 2733888
Alignment:
Q  233 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctt 328  Q
    |||||||||||||||||| |||||| ||| ||||||||  |||||||||| || |||||||||| |||||||||  | ||||||||||||||||||    
T  2733793 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 2733888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 2339015 - 2338979
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||||||||||||||||||    
T  2339015 caccaccgccggtgagccgcgaccactctcctccttc 2338979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 2339068 - 2339033
Alignment:
Q  136 agaacaagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||||||    
T  2339068 agaacaagtgagaaacgcgatccttttcttctccca 2339033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 21239338 - 21239373
Alignment:
Q  136 agaacaagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||||||    
T  21239338 agaacaagtgagaaacgcgatccttttcttctccca 21239373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 52893349 - 52893385
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||| ||||||||||||||    
T  52893349 caccaccgccggtgagccgcgatcactctcctccttc 52893385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 4329916 - 4329855
Alignment:
Q  210 gtttagagagctatctccatctctctc--cacaaaccctaattgttgtaacttgtaaggtaa 269  Q
    ||||| |||||||||||||||||||||  ||||||||||| || | |||| |||||||||||    
T  4329916 gtttaaagagctatctccatctctctctccacaaaccctagttctagtaaattgtaaggtaa 4329855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 54629920 - 54629948
Alignment:
Q  1 cttttaaaatcctaatccaatacaccccg 29  Q
    |||||||||||||||||||||||||||||    
T  54629920 cttttaaaatcctaatccaatacaccccg 54629948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 3935499 - 3935375
Alignment:
Q  205 cttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3935499 cttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 3935400  T
Q  305 atgatttgatgattacatgttcttt 329  Q
    || ||||||||||||||||||||||    
T  3935399 ataatttgatgattacatgttcttt 3935375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 38978506 - 38978382
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38978506 ctccttcttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtagtgtgaaattgaatgtaatttccttcaatt 38978407  T
Q  299 atgattatgatttgatgattacatg 323  Q
    |||||||||||||||||||||||||    
T  38978406 atgattatgatttgatgattacatg 38978382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 25697694 - 25697570
Alignment:
Q  209 agtttagagagctatctccatc----tctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  25697694 agtttagagagctatctccatccatctctctccacaaaccctaattgttgttacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 25697595  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  25697594 ctgatttgatgattacatgttcttt 25697570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 32339602 - 32339652
Alignment:
Q  273 gaaattgaatgtaatttccttcaattatgattatgatttgatgattacatg 323  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  32339602 gaaattgaatgtaattttcttcaattatgattctgatttgatgattacatg 32339652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 3935573 - 3935537
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||||||||||||||||||||||    
T  3935573 caccaccgccggtgagccgcgaccactctcctccttc 3935537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 38978627 - 38978592
Alignment:
Q  136 agaacaagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||||||    
T  38978627 agaacaagtgagaaacgcgatccttttcttctccca 38978592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 8485572 - 8485531
Alignment:
Q  216 agagctatctccatctctctccacaaaccctaattgttgtaa 257  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  8485572 agagctatctctatctctctccacaaaccctaattcttgtaa 8485531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 20917027 - 20917079
Alignment:
Q  210 gtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgt 262  Q
    ||||| ||||||||||||||||||||||||||||| || || |||||| ||||    
T  20917027 gtttaaagagctatctccatctctctccacaaaccttagttcttgtaaattgt 20917079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 171
Target Start/End: Complemental strand, 3935622 - 3935591
Alignment:
Q  140 caagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||    
T  3935622 caagtgagaaacgcgatccttttcttctccca 3935591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 38978570 - 38978538
Alignment:
Q  176 accgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||||||||| ||||||||||||||    
T  38978570 accgccggtgagccgcgatcactctcctccttc 38978538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 3174156 - 3174280
Alignment:
Q  209 agtttagagagctatctcca----tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3174156 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 3174255  T
Q  305 atgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||||||    
T  3174256 atgatttgatgattacatgttcttt 3174280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 32863640 - 32863760
Alignment:
Q  209 agtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatga 308  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  32863640 agtttagagagctatctccatccatctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattctga 32863739  T
Q  309 tttgatgattacatgttcttt 329  Q
    |||||||||||||||||||||    
T  32863740 tttgatgattacatgttcttt 32863760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 10572695 - 10572819
Alignment:
Q  209 agtttagagagctatctcca----tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10572695 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattgtgatt 10572794  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  10572795 ctgatttgatgattacatgttcttt 10572819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 19209239 - 19209115
Alignment:
Q  205 cttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    |||||||||| |||||||||| |||||||||||| |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| | |||||    
T  19209239 cttcagtttaaagagctatctgcatctctctccataaaccctaattgttgtaaatcgtaaggtaacgtgaaattgaatgtaatttccttcaaatctgatt 19209140  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     || ||| |||||||||||||||||    
T  19209139 ctgctttaatgattacatgttcttt 19209115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 23737874 - 23737998
Alignment:
Q  205 cttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    |||||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||| | |||||    
T  23737874 cttcagtttaaagagctatctgcatctctctccataaaccctaattgttgtaaattgtaaggtaacatgaaattgaatgtaatttccttcaaatctgatt 23737973  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     |  ||| |||||||||||||||||    
T  23737974 cttctttaatgattacatgttcttt 23737998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 43300188 - 43300290
Alignment:
Q  227 catctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttc 326  Q
    |||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| ||||| |  ||| ||||||||||||||    
T  43300188 catctctctccataaaccctaattgttgtaaattataaggtaatgtgaaattgaatgtaatttcgttcaattctgatttttctttaatgattacatgttc 43300287  T
Q  327 ttt 329  Q
    |||    
T  43300288 ttt 43300290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 325
Target Start/End: Complemental strand, 41958717 - 41958605
Alignment:
Q  212 ttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgattt 311  Q
    |||||||| |||||| ||||||||||| |||||||||||||||| | ||  |||||||||||||||||||||||||||| ||||||| ||||| |  |||    
T  41958717 ttagagagttatctc-atctctctccataaaccctaattgttgttaattacaaggtaatgtgaaattgaatgtaatttcgttcaattctgatttttcttt 41958619  T
Q  312 gatgattacatgtt 325  Q
     |||||||||||||    
T  41958618 aatgattacatgtt 41958605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 22273243 - 22273148
Alignment:
Q  233 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctt 328  Q
    |||||||||||||||||| |||||| ||| ||||||||  |||||||||| || |||||||||| |||||||||  | ||||||||||||||||||    
T  22273243 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 22273148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 18739453 - 18739410
Alignment:
Q  282 tgtaatttccttcaattatgattatgatttgatgattacatgtt 325  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  18739453 tgtaatttccttcaattatgattctgatttgatgattacatgtt 18739410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 104; Significance: 8e-52; HSPs: 3)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 2453 - 2577
Alignment:
Q  199 ctcctccttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatt 298  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  2453 ctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttca--- 2549  T
Q  299 atgattatgatttgatgattacatgttcttt 329  Q
       ||||||||||||||||||||||||||||    
T  2550 ---attatgatttgatgattacatgttcttt 2577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 2382 - 2421
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2382 ccacaccaccgccggtgagccgcgaccactctcctccttc 2421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 2324 - 2359
Alignment:
Q  136 agaacaagtgagaaacgcgatccttttcttctccca 171  Q
    ||||||||||||||||||||||||||||||||||||    
T  2324 agaacaagtgagaaacgcgatccttttcttctccca 2359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 6472371 - 6472247
Alignment:
Q  209 agtttagagagctatctccatc----tctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6472371 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 6472272  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  6472271 ctgatttgatgattacatgttcttt 6472247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 9371799 - 9371923
Alignment:
Q  209 agtttagagagctatctcca----tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9371799 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 9371898  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  9371899 ctgatttgatgattacatgttcttt 9371923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 21358149 - 21358025
Alignment:
Q  209 agtttagagagctatctccatc----tctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21358149 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 21358050  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  21358049 ctgatttgatgattacatgttcttt 21358025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 209 - 328
Target Start/End: Complemental strand, 35013101 - 35012978
Alignment:
Q  209 agtttagagagctatctccatc----tctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  35013101 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaatcctgatt 35013002  T
Q  305 atgatttgatgattacatgttctt 328  Q
     ||||||||| |||||||||||||    
T  35013001 ctgatttgataattacatgttctt 35012978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 44660309 - 44660425
Alignment:
Q  212 ttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgattt 311  Q
    |||||||| |||||| ||||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||||| ||||| |  |||    
T  44660309 ttagagagttatctc-atctctctccataaaccctaattgttctaaattataaggtaatgtgaaattgaatgtaatttcgttcaattctgatttttcttt 44660407  T
Q  312 gatgattacatgttcttt 329  Q
     |||||||||||||||||    
T  44660408 aatgattacatgttcttt 44660425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 320
Target Start/End: Original strand, 31419280 - 31419367
Alignment:
Q  233 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattac 320  Q
    |||||||||||||||||| |||||| ||| ||||||||  ||||||||||||| |||||||||| |||||||||  | ||||||||||    
T  31419280 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatgtattttccttcaaatatgattattctctgatgattac 31419367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 12003099 - 12003038
Alignment:
Q  210 gtttagagagctatctccatctctct--ccacaaaccctaattgttgtaacttgtaaggtaa 269  Q
    ||||| ||||||||||||||||||||  ||||| ||||||||| |||||| |||||||||||    
T  12003099 gtttaaagagctatctccatctctctttccacacaccctaattcttgtaaattgtaaggtaa 12003038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 29599378 - 29599254
Alignment:
Q  209 agtttagagagctatctccatc----tctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29599378 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 29599279  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  29599278 ctgatttgatgattacatgttcttt 29599254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 324671 - 324795
Alignment:
Q  209 agtttagagagctatctcca----tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  324671 agtttagagagctatctccatccatctctctccacaagccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgatt 324770  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     |||||||||||||| |||||||||    
T  324771 ctgatttgatgattagatgttcttt 324795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 210 - 329
Target Start/End: Complemental strand, 17481109 - 17480990
Alignment:
Q  210 gtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgat 309  Q
    ||||| ||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||  |    
T  17481109 gtttaaagagctatctccatctctctccacaaatcctaattcttgtaaattgtaaggtaatgtgaaattgaatgtattttccttcaaatatgattattct 17481010  T
Q  310 ttgatgattacatgttcttt 329  Q
    ||||||||||||||||||||    
T  17481009 ttgatgattacatgttcttt 17480990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 48184231 - 48184349
Alignment:
Q  209 agtttagagagctatctcca----tctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||    
T  48184231 agtttagagagctatctccatccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttca------att 48184324  T
Q  305 atgatttgatgattacatgttcttt 329  Q
     ||||||||||||||||||||||||    
T  48184325 ctgatttgatgattacatgttcttt 48184349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 26354997 - 26355122
Alignment:
Q  209 agtttagagagctatctccatc--tc--tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaa-ttgaatgtaatttccttcaattatgat 303  Q
    |||| |||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  26354997 agttcagagagctatctccatccatccttctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaatttgaatgtaacttccttcaattctgat 26355096  T
Q  304 tatgatttgatgattacatgttcttt 329  Q
    | ||||||||||||||||||||||||    
T  26355097 tctgatttgatgattacatgttcttt 26355122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 26014504 - 26014579
Alignment:
Q  250 tgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgtt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26014504 tgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgtt 26014579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 6165133 - 6165049
Alignment:
Q  238 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||| |||||||||||||||||    
T  6165133 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacat 6165049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 16764621 - 16764537
Alignment:
Q  238 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||| |||||||||||||||||    
T  16764621 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacat 16764537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 10801650 - 10801568
Alignment:
Q  240 aaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacat 322  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||| |||||||||||||||||    
T  10801650 aaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacat 10801568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 6165245 - 6165206
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  6165245 ccacaccaccgctggtgagccgcgaccactctcctccttc 6165206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 16764733 - 16764694
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  16764733 ccacaccaccgctggtgagccgcgaccactctcctccttc 16764694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 10801765 - 10801726
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  10801765 ccacaccaccgcttgtgagccgcgaccactctcctccttc 10801726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 26354912 - 26354948
Alignment:
Q  172 caccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||| || |||||||||||||||||||||    
T  26354912 caccaccgccggcgaaccgcgaccactctcctccttc 26354948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 32397224 - 32397349
Alignment:
Q  209 agtttagagagctatctccatc--tc--tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaatt-gaatgtaatttccttcaattatgat 303  Q
    ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  32397224 agtttagagagctatctccatccatccttctccacaaaccctaattgttgtaacttataaggtaatgtgaaatttgaatgtaatttccttcaattctgat 32397323  T
Q  304 tatgatttgatgattacatgttcttt 329  Q
    | ||||||||||||||||||||||||    
T  32397324 tctgatttgatgattacatgttcttt 32397349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 9303000 - 9303095
Alignment:
Q  208 cagtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgatt 304  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  9303000 cagttcagagagttatctccatctctctccacaaaccctaattgtta-aacttgaaaggtaatgtgaaattgaatgtaatttccttcaattttgatt 9303095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 7171047 - 7171142
Alignment:
Q  233 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctt 328  Q
    |||||||||||||||||| |||||| ||| ||||||||  |||||||||| || |||||||||| |||||||||  | ||||||||||||||||||    
T  7171047 tctccacaaaccctaattcttgtaaattgcaaggtaataagaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 7171142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 14654704 - 14654645
Alignment:
Q  210 gtttagagagctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaa 269  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||| |||||||||||    
T  14654704 gtttaaagagctatctccatctctctccacaaaccctagttcttgtaaattgtaaggtaa 14654645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 32397747 - 32397808
Alignment:
Q  210 gtttagagagctatctccatctc--tctccacaaaccctaattgttgtaacttgtaaggtaa 269  Q
    ||||| |||||||||||||||||  ||||||||||||||| || |||||| |||||||||||    
T  32397747 gtttaaagagctatctccatctctctctccacaaaccctagttcttgtaaattgtaaggtaa 32397808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 218 - 325
Target Start/End: Original strand, 1208 - 1319
Alignment:
Q  218 agctatctccatctctctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttc----aattatgattatgatttga 313  Q
    |||||||| |||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||| |||| |||    
T  1208 agctatcttcatctctcacaacaaacactaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttccttcaattaattatgattctgatatga 1307  T
Q  314 tgattacatgtt 325  Q
    ||||||||||||    
T  1308 tgattacatgtt 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 8467 - 8383
Alignment:
Q  238 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||| |||||||||||||||||    
T  8467 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacat 8383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 8579 - 8540
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  8579 ccacaccaccgctggtgagccgcgaccactctcctccttc 8540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 2888 - 2972
Alignment:
Q  238 acaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||| |||||||||||||||||    
T  2888 acaaaccctaattgttgtaacttgtaagttaatgtgaaattgaatgtaattgtcttcaattctgattctgatttgatgattacat 2972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 2776 - 2815
Alignment:
Q  169 ccacaccaccgccggtgagccgcgaccactctcctccttc 208  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  2776 ccacaccaccgctggtgagccgcgaccactctcctccttc 2815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 1043 - 925
Alignment:
Q  218 agctatctccatctctctccacaa---accctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttcct----tcaattatgattatgatt 310  Q
    |||||||| |||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||    | |||||||||| ||||     
T  1043 agctatcttcatctctctccacaacaaaccctaattgttgtaatttgtaaggtaatgtgaaattgaatgtaatttcctttaattaattatgattctgata 944  T
Q  311 tgatgattacatgttcttt 329  Q
    ||||||||| |||||||||    
T  943 tgatgattatatgttcttt 925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 39631 - 39727
Alignment:
Q  233 tctccacaaaccctaattgttgtaacttgtaaggtaatgtgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttcttt 329  Q
    |||||||||||||||||| |||||| ||  |||||||| ||||||| |||||| |||||||||| |||||||||  | |||||||||| ||||||||    
T  39631 tctccacaaaccctaatttttgtaaatttcaaggtaatatgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttcttt 39727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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