View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_38 (Length: 328)
Name: NF3273_low_38
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_38 |
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| [»] scaffold1819 (2 HSPs) |
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| [»] scaffold1104 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 304
Target Start/End: Original strand, 34406445 - 34406745
Alignment:
| Q |
5 |
aacaaaacaaaaccataatacttagttaacagtgacatttgacataaaaacttcaaaattttcaaatcataaggtttaaaatnnnnnnn-catcccatct |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34406445 |
aacaaaacaaaaccataatacttagttaacagtgacatttgacataaaaacttcaaaattttcaaatcataaggtttaaaataaaaaaaacatcccatct |
34406544 |
T |
|
| Q |
104 |
catcatcatctctaggcttctattgtcctgttctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacattgta |
203 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34406545 |
catcatcatctctaggcttctattatcctgttctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacattgta |
34406644 |
T |
|
| Q |
204 |
acctacactttctccttgttcctccttctccagtagaagaataagtagtgatggagaaaggagtaggagtttgtggtggctttataaccctttcaattat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34406645 |
acctacactttctccttgttcctccttctccagtagatgaataagtagtgatggagaaaggagtaggagtttgtggtggctttataaccctttcaattat |
34406744 |
T |
|
| Q |
304 |
c |
304 |
Q |
| |
|
| |
|
|
| T |
34406745 |
c |
34406745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 108 - 277
Target Start/End: Complemental strand, 34714050 - 34713882
Alignment:
| Q |
108 |
atcatctctaggcttctattgtcctgttctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacct |
207 |
Q |
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||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| | |
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| T |
34714050 |
atcatatctaggcttcttgtgaacttttctatggcctccaagtgcttgaaatgaagtgaaagtttttttgcatgttttgcatgcatacacattgtaacgt |
34713951 |
T |
|
| Q |
208 |
acactttctccttgttcctccttctccagtagaagaataag---tagtgatggagaaaggagtaggagtttgt |
277 |
Q |
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|||||||| ||||||||||||||| ||||||||||||| || ||||||||||||| |||||| |||| |
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| T |
34713950 |
gcactttct-cttgttcctccttct---gtagaagaataagcaatattgatggagaaagggataggagattgt |
34713882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 34710400 - 34710287
Alignment:
| Q |
134 |
ttctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctc |
233 |
Q |
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||||||||||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||||||||| | |||||||| |||||| ||||||||| |
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| T |
34710400 |
ttctatggcctccaagtgcttgagatgaagtgaatgttttgttgcatgttttgcatgcatacacattgtaacgtgcactttct-cttgtttctccttctc |
34710302 |
T |
|
| Q |
234 |
cagtagaagaataag |
248 |
Q |
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|||||||||||||| |
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|
| T |
34710301 |
tagtagaagaataag |
34710287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 40689368 - 40689312
Alignment:
| Q |
223 |
tcctccttctccagtagaagaataagtagtgatggagaaaggagtaggagtttgtgg |
279 |
Q |
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||||||||| ||||| ||||||| || ||||||||||||||| |||||| |||||| |
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|
| T |
40689368 |
tcctccttcaccagttgaagaattagcagtgatggagaaaggtataggagattgtgg |
40689312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 40689740 - 40689676
Alignment:
| Q |
135 |
tctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacat |
199 |
Q |
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||||||||| ||||| ||||||||||||| ||| | | |||| |||||||||||| |||| |||| |
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| T |
40689740 |
tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat |
40689676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold1819
Description:
Target: scaffold1819; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 313
Target Start/End: Original strand, 753 - 912
Alignment:
| Q |
153 |
ttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagt |
252 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||| ||| ||||||||| | |||| ||||||||||| || ||| |
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| T |
753 |
ttgaaatgaagtaaaagtttttttacatgttttgcatgcatacacattgcaacct-ggtgttccacttgttccttcctctctagtagaagaattagcagt |
851 |
T |
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| Q |
253 |
gatggagaaaggagtaggagtttgtggtggctttataaccctttcaattatctcccctttg |
313 |
Q |
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||| |||||||| |||||| | | ||||||||||||| |||| |||||||||| ||||| |
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| T |
852 |
gatagagaaagggataggagatatttgtggctttataactcttttaattatctcctctttg |
912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 453 - 406
Alignment:
| Q |
154 |
tgaaatgaagtgaaagatttgttacatgttttgcatgcatacacattg |
201 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||||||| |
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|
| T |
453 |
tgaaatgaaatgaaagttttgttacatgttttggatgcatacacattg |
406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 313
Target Start/End: Original strand, 2275 - 2434
Alignment:
| Q |
153 |
ttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagt |
252 |
Q |
| |
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|||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||| ||| ||||||||| | |||| ||||||||||| || ||| |
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| T |
2275 |
ttgaaatgaagtaaaagtttttttacatgttttgcatgcatacacattgcaacct-ggtgttccacttgttccttcctctctagtagaagaattagcagt |
2373 |
T |
|
| Q |
253 |
gatggagaaaggagtaggagtttgtggtggctttataaccctttcaattatctcccctttg |
313 |
Q |
| |
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||| |||||||| |||||| | | ||||||||||||| |||| |||||||||| ||||| |
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|
| T |
2374 |
gatagagaaagggataggagatatttgtggctttataactcttttaattatctcctctttg |
2434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 1975 - 1928
Alignment:
| Q |
154 |
tgaaatgaagtgaaagatttgttacatgttttgcatgcatacacattg |
201 |
Q |
| |
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||||||||| |||||| |||||||||||||||| |||||||||||||| |
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|
| T |
1975 |
tgaaatgaaatgaaagttttgttacatgttttggatgcatacacattg |
1928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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