View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_4 (Length: 640)
Name: NF3273_low_4
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 16 - 632
Target Start/End: Complemental strand, 3522524 - 3521908
Alignment:
| Q |
16 |
caaaaacaggaacagaaaacaagcagcttaacaaaaactgatccctatacatgtgaatttcattaaccttatccctttctcttcgccccgaaggagaata |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522524 |
caaaaacgggaacagaaaacaagcagcttaacaaaaactgatccctatacatgtgaatttcattaaccttatccctttctcttcgccccgaaggagaata |
3522425 |
T |
|
| Q |
116 |
caaagttgctcgatacaccttggagccacggctagcttcttgaacacaatgaatgagagttctcggacctgtaatatcgggaacatagctaaccgtaact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522424 |
caaagttgctcgatacaccttggagccacggctagcttcttgaacacattgaatgagagttctcggacctgtaatatcgggaacatagctaaccgtaact |
3522325 |
T |
|
| Q |
216 |
atacgttctgaaaagtcaatttcaacacggtttacacccgcaactaactcaagataagacaccaagacattagcatcttcttcagaatcaatcccttcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522324 |
atacgttctgaaaagtcaatttcaacacggtttacacccgcaactaactcaagataagacaccaagacattagcatcttcttcagaatcaatcccttcaa |
3522225 |
T |
|
| Q |
316 |
ctttaagatgaactttatttgcgtcattcccagagctaataagctctgctccaaatcccgcatcttctatcgattcaattatcttttcaggattggcaag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522224 |
ctttaagatgaactttatttgcgtcattcccagagctaataagctctgctccaaatcccgcatcttctatcgattcaattatcttttcaggattggcaag |
3522125 |
T |
|
| Q |
416 |
gttaggatcatagtgcacttttgcctcctctaaagctaaaccaactattgcccttttcactccatcaatcatttgaagtgctttctcaacagactcagaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522124 |
gttaggatcatagtgcacttttgcctcctctaaagctaaaccaactattgcccttttcactccatcaatcatttgaagtgctttctcaacagactcagaa |
3522025 |
T |
|
| Q |
516 |
caacttgtacaagccattcctttaatcctaactcggcacacagatatatcttggtcatgatcatgaacctcattaaccctaaacccactctcttccatac |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522024 |
caacttgtacaagccattcctttaatcctaactcggcacacagatatatcttggtcatgatcatgaacctcattaaccctaaacccactctcttccatac |
3521925 |
T |
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| Q |
616 |
tttcttttattcttttc |
632 |
Q |
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||||||||||||||||| |
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| T |
3521924 |
tttcttttattcttttc |
3521908 |
T |
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