View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_40 (Length: 316)
Name: NF3273_low_40
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 139 - 300
Target Start/End: Original strand, 20014969 - 20015130
Alignment:
| Q |
139 |
tttataactgaattaagaagcacaattctacctccaagactcacatatacttggtacttagagaatttaatctactccttaattgatccaacaacggttc |
238 |
Q |
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| T |
20014969 |
tttataactgaattaagaagcacaattctacctccaagactcacatatacttggtactcagagaatttaatctactccttaattgatccaacaacggttt |
20015068 |
T |
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| Q |
239 |
ccaagtagctaaccttctagaatttgcttctaccggtaatcccaaatatctaaacactcaat |
300 |
Q |
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| T |
20015069 |
ccaagtatctaaccttctagaatttgcacctaccggtaatcccaaatatctaaacactcaat |
20015130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 20014857 - 20014917
Alignment:
| Q |
7 |
aagaccacccttggttcttggttgacaaatcctccttcaactcacccaattaatcttcttt |
67 |
Q |
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| T |
20014857 |
aagaccactcttggtccctggttgacaaatcctcctccaactcacccaattaatcttcttt |
20014917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 186
Target Start/End: Complemental strand, 36987843 - 36987813
Alignment:
| Q |
156 |
aagcacaattctacctccaagactcacatat |
186 |
Q |
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| T |
36987843 |
aagcacaattctacctccaagactcacatat |
36987813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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