View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_42 (Length: 315)
Name: NF3273_low_42
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 39346490 - 39346202
Alignment:
| Q |
11 |
gatgaagaaaactacaaaataaaaaactagtgagacttgaatcatcaaattaccatttctttatacaagtctgtatgaaatatctcctaatagagttata |
110 |
Q |
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| T |
39346490 |
gatgaagaaaactacaaaatctaaaactagtgagacttgaatcatcaaattatcatttctttatacaagtctgtatgaaatatctcctaatagagttata |
39346391 |
T |
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| Q |
111 |
tagaagagaagttttagagaacaaggcctatcatgtcattgaatatacgtagagcattcatgtatacctaaacaaggcctatatattcatgaggtgcaaa |
210 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
39346390 |
tagaaaagaagttttagagaacaaggcctatcatgtcattgaatatacgtagagcattcatgtatccctcaacaaggcctatatattcatgaggtgcaaa |
39346291 |
T |
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| Q |
211 |
tgcattgatgatgtgattatagaatagttcaagcattttgagttagagccatcaccaattaattagatgattattatgtatcacatagg |
299 |
Q |
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| T |
39346290 |
tgcattgatgatgtgattatagaatagttcaagcattttgagttagagccatcaccaattaattagatgattattatgtatcacatagg |
39346202 |
T |
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