View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_43 (Length: 312)
Name: NF3273_low_43
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 70 - 296
Target Start/End: Original strand, 19024588 - 19024814
Alignment:
| Q |
70 |
aggttaaccatctttcctcatttctctcttcttttgctgctatagcattaatttcgtcatttttatttgaaagttaataatttaagatatgatgatgtgc |
169 |
Q |
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| T |
19024588 |
aggttaaccatctttcctcatttctctcttcttttgctgctatagcattaatttcgtcatttttatttgaaagttaacaatttaagatatgatgatgtgc |
19024687 |
T |
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| Q |
170 |
cttatgaagcacatactcagaaacctttgatacttagacaccgataataatttgagaagatagaagctattgaatataattatatatgttggtgtcatta |
269 |
Q |
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| T |
19024688 |
cttatgaagcacatactcagaaacctttgatacttagacaccgataataatttgagaagatagaagctattgaatataattatatgtgttggtgtcatta |
19024787 |
T |
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| Q |
270 |
tttgtcgaactccaatgagtagttcct |
296 |
Q |
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| T |
19024788 |
tttgtcgaactccaatgagtagttcct |
19024814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19024522 - 19024563
Alignment:
| Q |
1 |
ttccacatacaccccctttgtttcatcactaagagcttctcg |
42 |
Q |
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| T |
19024522 |
ttccacatacaccccctttgtttcatcactaagagcttctcg |
19024563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 7422170 - 7422221
Alignment:
| Q |
214 |
taataatttgagaagatagaagctattgaatataattatatatgttggtgtc |
265 |
Q |
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| T |
7422170 |
taataatttgagaaaatagaagtgattgaatgtaattatatgtgttggtgtc |
7422221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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