View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_44 (Length: 312)
Name: NF3273_low_44
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 298
Target Start/End: Original strand, 48873021 - 48873313
Alignment:
| Q |
10 |
aagaatattgtcaaaggatggaagggtggggttgtggatggtcaagagtgtggaaattcaacaactaaggtgaatttgagagtgtcggaaaaagaaggga |
109 |
Q |
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| T |
48873021 |
aagaaaattgtcaaaggatggaagggtggggttgtagatggtcaagagtgtggaaattcaacaacgaaggtgaatttgagagtgtcggaaaaagaaggga |
48873120 |
T |
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| Q |
110 |
attggaataaagctcattttgattcaannnnnnnnncttt----tcaatatgaaacctagctattggattcagttgattttaaaattttaatttatattg |
205 |
Q |
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| T |
48873121 |
attggaataaagctcattttgattcgatttttttttctttcttttcaatatgaaacctagctattggattcagttgattttaaaattttaatttatattg |
48873220 |
T |
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| Q |
206 |
aagcaggtaccaatccctgttggctgatgctgtgaatggaatgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaata |
298 |
Q |
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| T |
48873221 |
aagcaggtaccaatccctgttggctgatgctgtcaatggaatgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaata |
48873313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 298
Target Start/End: Original strand, 48878325 - 48878617
Alignment:
| Q |
10 |
aagaatattgtcaaaggatggaagggtggggttgtggatggtcaagagtgtggaaattcaacaactaaggtgaatttgagagtgtcggaaaaagaaggga |
109 |
Q |
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| T |
48878325 |
aagaaaattgtcaaaggatggaagggtggggttgtagatggtcaagagtgtggaaattcaacaacgaaggtgaatttgagagtgtcggaaaaagaaggga |
48878424 |
T |
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| Q |
110 |
attggaataaagctcattttgattcaannnnnnnnncttt----tcaatatgaaacctagctattggattcagttgattttaaaattttaatttatattg |
205 |
Q |
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| T |
48878425 |
attggaataaagctcattttgattcgatttttttttctttcttttcaatatgaaacctagctattggattcagttgattttaaaattttaatttatattg |
48878524 |
T |
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| Q |
206 |
aagcaggtaccaatccctgttggctgatgctgtgaatggaatgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaata |
298 |
Q |
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| T |
48878525 |
aagcaggtaccaatccctgttggctgatgctgtcaatggaatgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaata |
48878617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 48856652 - 48856756
Alignment:
| Q |
192 |
tttaatttatattgaagcaggtaccaatccctgttggctgatgctgtgaatggaatgtgaagctgtggatgattgtttgtgaccagctatgctggtaagg |
291 |
Q |
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|||| ||||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||| | || || ||||||||||| ||||| |
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| T |
48856652 |
tttagtttatattgaagcagatggcaatccctgttggctgctgcagtgaatggaatgtgaagctgtggatgat--tatgggatcagctatgctgataagg |
48856749 |
T |
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| Q |
292 |
ttaaata |
298 |
Q |
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|| |||| |
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| T |
48856750 |
tttaata |
48856756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 48865969 - 48866003
Alignment:
| Q |
17 |
ttgtcaaaggatggaagggtggggttgtggatggt |
51 |
Q |
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| T |
48865969 |
ttgtccaaggatggaagggtggggttgtggatggt |
48866003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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