View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_47 (Length: 299)

Name: NF3273_low_47
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_47
NF3273_low_47
[»] chr4 (7 HSPs)
chr4 (30-245)||(53721784-53722007)
chr4 (41-108)||(9470469-9470536)
chr4 (143-203)||(53648267-53648328)
chr4 (1-35)||(53722379-53722413)
chr4 (140-207)||(9470985-9471053)
chr4 (143-207)||(6230183-6230248)
chr4 (145-232)||(56395566-56395653)
[»] chr2 (5 HSPs)
chr2 (1-136)||(7357369-7357504)
chr2 (40-232)||(9206657-9206862)
chr2 (143-232)||(29100057-29100146)
chr2 (143-207)||(23988361-23988426)
chr2 (181-245)||(7355135-7355198)
[»] chr8 (1 HSPs)
chr8 (40-232)||(42189157-42189362)
[»] chr7 (6 HSPs)
chr7 (35-232)||(7171915-7172125)
chr7 (143-232)||(37998018-37998107)
chr7 (143-232)||(2946548-2946637)
chr7 (143-232)||(6483617-6483706)
chr7 (143-232)||(33141953-33142042)
chr7 (156-216)||(18520633-18520694)
[»] chr1 (5 HSPs)
chr1 (41-127)||(41602676-41602761)
chr1 (140-232)||(41602135-41602227)
chr1 (143-245)||(1670860-1670963)
chr1 (143-245)||(6815928-6816031)
chr1 (143-232)||(16263787-16263876)
[»] chr5 (1 HSPs)
chr5 (143-232)||(41196093-41196182)
[»] chr3 (1 HSPs)
chr3 (145-232)||(50035392-50035479)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 53722007 - 53721784
Alignment:
Q  30 atgttcaacacaaatttgctttaaaatcatagattgaaggattatttgattgattttgctccattaaagttgtatgtgttgttgcagaaaagaaagaggg 129  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53722007 atgttcagcacaaatttgctttaaaatcatagattgaagggttatttgattgattttgctccattaaagttgtatgtgttgttgcaaaaaagaaagaggg 53721908  T
Q  130 gagatgg-------ggcgagagagtaaattagaataaaagaaagtaattgagtgtttgag-tgtatagtaaacattttgatccaaaagttaattatccct 221  Q
     ||||||       ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||    
T  53721907 aagatggaagatggggcgagagagtaaattaaaataaaagaaagtaattgagtgtttgaggtgtatagtaagcattttgatccaaaagttaattaaccct 53721808  T
Q  222 tatccaatggtctatactcatttt 245  Q
    ||||||||||||||||||||||||    
T  53721807 tatccaatggtctatactcatttt 53721784  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 9470536 - 9470469
Alignment:
Q  41 aaatttgctttaaaatcatagattgaaggattatttgattgattttgctccattaaagttgtatgtgt 108  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  9470536 aaatttgctttaaaatcaaagattgaagggttatttgattgattttactccattaaagttgtatgtgt 9470469  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 53648328 - 53648267
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatc 203  Q
    ||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  53648328 agagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtaaacattttgatc 53648267  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 53722413 - 53722379
Alignment:
Q  1 gaatgaagagactgagaagtgaatcagatatgttc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  53722413 gaatgaagagactgagaagtgaatcagatatgttc 53722379  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 9470985 - 9471053
Alignment:
Q  140 gagagagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaa 207  Q
    |||| ||||| ||||||||||||| |||||||| ||||| || |||| |||||| ||||||||||||||    
T  9470985 gagaaagtaatttagaataaaagagagtaattgggtgttagaggtgtgtagtaagcattttgatccaaa 9471053  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 6230248 - 6230183
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaa 207  Q
    ||||||| |||||||||||||||||||||  ||||  || || |||||||| ||||||||||||||    
T  6230248 agagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaa 6230183  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 56395653 - 56395566
Alignment:
Q  145 agtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    ||||| |||||||||||||||||||||  ||||  || || |||||||| ||||||||||| ||||||||||  |  ||||||||||||    
T  56395653 agtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatcc-aaagttaatttacttttatccaatggt 56395566  T

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Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 7357504 - 7357369
Alignment:
Q  1 gaatgaagagactgagaagtgaatcagatatgttcaacacaaatttgctttaaaatcatagattgaaggattatttgattgattttgctccattaaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||  |||||| | ||||||||||||||||||| || |||| |     
T  7357504 gaatgaagagactgagaagtgaatcagatatgttcagtataaatttgctttaaaatcatgtattgaaaggttatttgattgattttgcttcaataaattg 7357405  T
Q  101 gtatgtgttgttgcagaaaagaaagaggggagatgg 136  Q
    |||||||||||||||||||||||||| || ||||||    
T  7357404 gtatgtgttgttgcagaaaagaaagaaggaagatgg 7357369  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 9206657 - 9206862
Alignment:
Q  40 caaatttgctttaaaatcatagattgaaggattatttgattgattttgctccattaaagttgtatgtgttgttgcagaaaagaaagaggggagatg-ggg 138  Q
    ||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||| |||||||||||| | ||| ||||| || ||| | |||    
T  9206657 caaatttgctttaaaatcacatattgaagggttattttattgattttgctccattaaagttgcatgtgttgttgctggaaaaaaagaaggaagacgaggg 9206756  T
Q  139 cgagaga-----------gtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatcc 226  Q
     ||||||           |||| ||||||||||||| || ||||| ||||| || |||||||||||  |||||||||||||| ||| |||  ||||||||    
T  9206757 agagagaagagagaaggggtaatttagaataaaagatagcaattgggtgttggaggtgtatagtaagtattttgatccaaaaattagttaatccttatcc 9206856  T
Q  227 aatggt 232  Q
    ||||||    
T  9206857 aatggt 9206862  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 29100146 - 29100057
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    ||||||| |||||||||||||||||||||  ||||  || || |||||||||||||||||||| ||||||||||  |  ||||||||||||    
T  29100146 agagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaaacattttgatcc-aaagttaatttacttttatccaatggt 29100057  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 23988426 - 23988361
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaa 207  Q
    ||||||| |||||||||||||||||||||  ||||  || || |||||||| ||||||||||||||    
T  23988426 agagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaa 23988361  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 7355198 - 7355135
Alignment:
Q  181 agtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggtctatactcatttt 245  Q
    |||||||| ||||||||||||||| ||||||||||| || ||||| ||||||  || ||||||||    
T  7355198 agtgtataataaacattttgatcc-aaagttaattaacctttatctaatggttcatgctcatttt 7355135  T

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Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 42189362 - 42189157
Alignment:
Q  40 caaatttgctttaaaatcatagattgaaggattatttgattgattttgctccattaaagttgtatgtgttgttgcagaaaagaaagaggggagatggggc 139  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||| |||| |||||||| |||||||||| || |||||| ||    
T  42189362 caaatttgctttaaattcatagattgaagggttatttgattggttttgttccattaaagttgcatgtcttgttgcacaaaagaaagaaggaagatggagc 42189263  T
Q  140 ----gag--------agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatcc 226  Q
        |||        ||||||| ||||||||||| ||| |||||| ||||| || ||||||||||| ||||||||| ||||||||||||| || ||||||    
T  42189262 caaagagaaaagagaagagtaatttagaataaaacaaaataattgggtgttggaggtgtatagtaagcattttgattcaaaagttaattaacctttatcc 42189163  T
Q  227 aatggt 232  Q
    ||||||    
T  42189162 aatggt 42189157  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 232
Target Start/End: Original strand, 7171915 - 7172125
Alignment:
Q  35 caacacaaatttgctttaaaatcatagattgaaggattatttgattgattttgctccattaaagttgtatgtgttgttgcagaaaagaaagaggggagat 134  Q
    |||| ||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||| || |||     
T  7171915 caacccaaatttgctttaaaatcacatattgaagggttatttgattggttttgctccattaaagttgtatgtgttgttgctggaaaaaaagaaggaagac 7172014  T
Q  135 gggg-cgagaga-----------gtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatccct 221  Q
    ||||  ||||||           |||| ||||||||||| | || ||||||||||| || |||||||||||| | |||||||||||| |||||||  |||    
T  7172015 ggggtagagagaagagagaaggggtaatttagaataaaatatagcaattgagtgttggaggtgtatagtaaataatttgatccaaaaattaattagtcct 7172114  T
Q  222 tatccaatggt 232  Q
    |||||||||||    
T  7172115 tatccaatggt 7172125  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 37998018 - 37998107
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    |||||||||||||||||||||||||||||  ||||  || || |||||||| ||||||||||| ||||||||||  |  ||||||||||||    
T  37998018 agagtaaattagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatcc-aaagttaatttacttttatccaatggt 37998107  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 2946637 - 2946548
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    ||||||| |||||||||||||||||||||  ||||  || || |||||||| ||||||||||| ||||||||||  |  ||||||||||||    
T  2946637 agagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatcc-aaagttaatttacttttatccaatggt 2946548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 6483706 - 6483617
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    ||||||| |||||||||||||||||||||  ||||  || || |||||||| ||||||||||| ||||||||||  |  ||||||||||||    
T  6483706 agagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatcc-aaagttaatttacttttatccaatggt 6483617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 33142042 - 33141953
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    ||||||| |||||||||||||||||||||  ||||  || || |||||||| ||||||||||| ||||||||||  |  ||||||||||||    
T  33142042 agagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatcc-aaagttaatttacttttatccaatggt 33141953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 18520633 - 18520694
Alignment:
Q  156 ataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaatta 216  Q
    ||||||||||||||||| ||| |  | |||||||||||  ||||||||||||||||||||||    
T  18520633 ataaaagaaagtaattgggtgctgaaagtgtatagtaaggattttgatccaaaagttaatta 18520694  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 41602676 - 41602761
Alignment:
Q  41 aaatttgctttaaaatcatagattgaaggattatttgattgattttgctccattaaagttgtatgtgttgttgcagaaaagaaagag 127  Q
    |||||| ||||||||||| | |||||||| |||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||    
T  41602676 aaatttactttaaaatcacatattgaagggttatttgattgattttactccattaaagttgtatgtgtagttg-aaaaaagaaagag 41602761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 41602227 - 41602135
Alignment:
Q  140 gagagagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    |||| ||||| ||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||| ||||||||||  |  ||||||||||||    
T  41602227 gagaaagtaatttagaataaaagagagtaattgagtgttagaggtgtataataagcattttgatcc-aaagttaatttacttttatccaatggt 41602135  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 1670860 - 1670963
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggtctatactca 241  Q
    ||||||| ||||||||||||||||||||||  |||| || |||||||||||||||||| ||| ||| |||  |||  ||||||| ||||||  ||| |||    
T  1670860 agagtaatttagaataaaagaaagtaattggatgttggaggtgtatagtaaacattttaatctaaatgttggttaatccttatctaatggttcatattca 1670959  T
Q  242 tttt 245  Q
    ||||    
T  1670960 tttt 1670963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 6815928 - 6816031
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggtctatactca 241  Q
    ||||||| ||| |||||||||||||||||| ||||| || |||||||| ||||||||||||| ||| |||  |||  ||||||| ||||||  ||| |||    
T  6815928 agagtaatttaaaataaaagaaagtaattgggtgttggaggtgtatagcaaacattttgatctaaatgttggttaatccttatctaatggttcatattca 6816027  T
Q  242 tttt 245  Q
    ||||    
T  6816028 tttt 6816031  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 16263876 - 16263787
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    ||||||| |||||||||||||||||||||  ||||  || || |||||||| ||||||||||| ||||||||||  |  ||||||||||||    
T  16263876 agagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatcc-aaagttaatttccttttatccaatggt 16263787  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 41196182 - 41196093
Alignment:
Q  143 agagtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    ||||||| |||||||||||||||||||||  ||||  || || |||||||| ||||||||||| ||||||||||  |  ||||||||||||    
T  41196182 agagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatcc-aaagttaatttacttttatccaatggt 41196093  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 50035479 - 50035392
Alignment:
Q  145 agtaaattagaataaaagaaagtaattgagtgtttga-gtgtatagtaaacattttgatccaaaagttaattatcccttatccaatggt 232  Q
    ||||| |||||||||||||||||||||  ||||  || || |||||||| ||||||||||| ||||||||||  |  ||||||||||||    
T  50035479 agtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatcc-aaagttaatttacttttatccaatggt 50035392  T

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