View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_49 (Length: 297)
Name: NF3273_low_49
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 36151640 - 36151371
Alignment:
| Q |
11 |
cacagaccctgcagcagaaacatcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
110 |
Q |
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| T |
36151640 |
cacagaccctgcagcagaaatatcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
36151541 |
T |
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| Q |
111 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
36151540 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgat |
36151441 |
T |
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| Q |
211 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatact |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151440 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatact |
36151371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 36155026 - 36154757
Alignment:
| Q |
11 |
cacagaccctgcagcagaaacatcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36155026 |
cacagaccctgcagcagaaacatcagcaggtaaatccttaccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
36154927 |
T |
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| Q |
111 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
36154926 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgat |
36154827 |
T |
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| Q |
211 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatact |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154826 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatact |
36154757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 5274006 - 5273903
Alignment:
| Q |
156 |
ggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtag |
255 |
Q |
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||||| ||||| ||||| |||||||||||||| | ||| ||| | ||||| ||||| ||||| |||||| |||| || ||||| || || |||||||| | |
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| T |
5274006 |
ggagctttagcaggaagcacaagatcaagaggaacaagaaccttgtcaacctgatatatagctagtttgttgtctgtgtaaactgttccagtaacggttg |
5273907 |
T |
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| Q |
256 |
catt |
259 |
Q |
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|||| |
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|
| T |
5273906 |
catt |
5273903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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