View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3273_low_5 (Length: 637)
Name: NF3273_low_5
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_5 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0703 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 278 - 627
Target Start/End: Complemental strand, 10160385 - 10160037
Alignment:
| Q |
278 |
ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10160385 |
ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg |
10160286 |
T |
|
| Q |
378 |
gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatag |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10160285 |
gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatag |
10160186 |
T |
|
| Q |
478 |
gtgatggttctcaaattaatttgtggcgtatgccttggattcgcacccctttctaatcttaaactgactgctccgccgttggtgcaccatgaggatatta |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
10160185 |
gtgatggttctcaaattaatttgtggcgtatgccttggattcgca-cccttcctaatctcaaaccgactactccgccgttggtgcaccatgaggatatta |
10160087 |
T |
|
| Q |
578 |
cagttaattatttgttgaacccgggttggaattcttggaacatccctttg |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10160086 |
cagttaattatttgttgaacccgggttggaattcttggaacatccctttg |
10160037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 288 - 522
Target Start/End: Original strand, 16861901 - 16862135
Alignment:
| Q |
288 |
tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||| || ||||| | | |||||||||| ||||| | ||| ||| ||||||| |||| |
|
|
| T |
16861901 |
tctatgcttggtaagcaaagttggaaactcatgacagactcaaattccttacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttgg |
16862000 |
T |
|
| Q |
388 |
atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
| || || || ||||||||||| || |||||||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||| ||| ||||||| |
|
|
| T |
16862001 |
aagcacctcttggtcataatccaagctacacatggaggagtctttggagtaaccaatcattacttacgttgggctatagatggaagattggtaatggttc |
16862100 |
T |
|
| Q |
488 |
tcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
| || ||| |||||| |||||||||||||||| |
|
|
| T |
16862101 |
aaatataaatgtgtggccaatgccttggattcgca |
16862135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 472
Target Start/End: Complemental strand, 21731185 - 21731064
Alignment:
| Q |
351 |
ctcaaagctaaatactacccgcgaagggattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttac |
450 |
Q |
| |
|
|||||||||||||||| ||| || |||| || |||||||| || || ||||||||||| || | |||||||||||| |||||||| |||||| | | |
|
|
| T |
21731185 |
ctcaaagctaaatacttccctcgtcgggacttcttggatgcacctcttggtcataatccaagctacatatggaggagtctttggagtactcaatctcttc |
21731086 |
T |
|
| Q |
451 |
ttaccttgggtcatagatggaa |
472 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
21731085 |
ttaccttgggccatagatggaa |
21731064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 278 - 627
Target Start/End: Complemental strand, 9182161 - 9181813
Alignment:
| Q |
278 |
ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9182161 |
ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg |
9182062 |
T |
|
| Q |
378 |
gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatag |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9182061 |
gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatag |
9181962 |
T |
|
| Q |
478 |
gtgatggttctcaaattaatttgtggcgtatgccttggattcgcacccctttctaatcttaaactgactgctccgccgttggtgcaccatgaggatatta |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
9181961 |
gtgatggttctcaaattaatttgtggcgtatgccttggattcgca-cccttcctaatctcaaaccgactacttcgccgttggtgcaccatgaggatatta |
9181863 |
T |
|
| Q |
578 |
cagttaattatttgttgaacccgggttggaattcttggaacatccctttg |
627 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9181862 |
cagttaattatttgttgaacccgtgttggaattcttggaacatccctttg |
9181813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 278 - 627
Target Start/End: Original strand, 11626112 - 11626460
Alignment:
| Q |
278 |
ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11626112 |
ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg |
11626211 |
T |
|
| Q |
378 |
gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatag |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11626212 |
gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatag |
11626311 |
T |
|
| Q |
478 |
gtgatggttctcaaattaatttgtggcgtatgccttggattcgcacccctttctaatcttaaactgactgctccgccgttggtgcaccatgaggatatta |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
11626312 |
gtgatggttctcaaattaatttgtggcgtatgccttggattcgca-cccttcctaatctcaaaccgactactacgccgttggtgcaccatgaggatatta |
11626410 |
T |
|
| Q |
578 |
cagttaattatttgttgaacccgggttggaattcttggaacatccctttg |
627 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11626411 |
cagttaattatttgttgaacccgagttggaattcttggaacatccctttg |
11626460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 282 - 518
Target Start/End: Original strand, 50181491 - 50181727
Alignment:
| Q |
282 |
aacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggatt |
381 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| || | ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
50181491 |
aacctttctatgctcggtaagcaaagttggaaacttctatccgactcatcctctctattctcaaggatcctcaaagctaaatactttccccgaagggatt |
50181590 |
T |
|
| Q |
382 |
ttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtga |
481 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| || | |
|
|
| T |
50181591 |
ttttggatgccaatctcggccacaatccaagttatacatggaggagtctatggagtacgcaatctttacttaccttaggccatagatggaagattggaaa |
50181690 |
T |
|
| Q |
482 |
tggttctcaaattaatttgtggcgtatgccttggatt |
518 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
50181691 |
cggttctcaaaataatgtgtggaatatgccttggatt |
50181727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 288 - 487
Target Start/End: Original strand, 44138391 - 44138590
Alignment:
| Q |
288 |
tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || || || | ||| |||| || | || |||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
44138391 |
tctatgcttggtaagcaaagttggaaactcctttcagattcgtcttctctacttacacgaattctcaaagctaaatatttcccgcgaagggatttcttgg |
44138490 |
T |
|
| Q |
388 |
atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
||||| ||||||||||||||||| || || ||||| || ||||||||| ||||| ||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
44138491 |
atgcccctctcggccataatccaagctacacctggagaagcctatggagtgcacaacatttacttaccttgggacatagatggaagattggttatggttc |
44138590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 285 - 475
Target Start/End: Complemental strand, 51493191 - 51493001
Alignment:
| Q |
285 |
ctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttt |
384 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| | ||||||||| || ||||| | | |||||||||||||||||| ||| ||| |||||| | |
|
|
| T |
51493191 |
ctctcaatgctcggtaagcaaagttggaaactcctcaccgactcaaattccttacttactcgtgtcctcaaagctaaatacttccctagaatggatttct |
51493092 |
T |
|
| Q |
385 |
tggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagat |
475 |
Q |
| |
|
|||||||| || |||||||||||||| || |||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51493091 |
tggatgcccctcttggccataatccaagctacgcatggaggggtctttggagcactcaatctttacttaccttgggtcatagatggaagat |
51493001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 402 - 520
Target Start/End: Original strand, 20128409 - 20128527
Alignment:
| Q |
402 |
cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaattaatttgt |
501 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||| | |||||||| ||| |
|
|
| T |
20128409 |
cataatccaagctacacttggaggagtctatggagtacccaatctcttcttaccttgggacatagatggaagattggtgatggcacaaaaattaatatgt |
20128508 |
T |
|
| Q |
502 |
ggcgtatgccttggattcg |
520 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
20128509 |
ggagtatgccttggattcg |
20128527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 288 - 522
Target Start/End: Complemental strand, 12460203 - 12459969
Alignment:
| Q |
288 |
tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg |
387 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | | ||||||| || ||||| | | |||||||||| ||||| | ||| ||| ||||||| |||| |
|
|
| T |
12460203 |
tctatgctcggtaagcaaagttggaaactcatgacagactcaaattccttacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttgg |
12460104 |
T |
|
| Q |
388 |
atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
| || || || ||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||| ||| |||| || |
|
|
| T |
12460103 |
aagcacctcttggtcataatccaagctatacatggaggagtctttggagtacccaatcattacttacgttgggctatagatggaagattggtaatggctc |
12460004 |
T |
|
| Q |
488 |
tcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||| |
|
|
| T |
12460003 |
aaaaataaatgtgtggtcaatgccttggattcgca |
12459969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 291 - 517
Target Start/End: Complemental strand, 27644774 - 27644548
Alignment:
| Q |
291 |
atgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatg |
390 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| ||||| | | ||||||||||| ||||| | |||||| |||||||| ||||||| |
|
|
| T |
27644774 |
atgcttggtaaacaaagttggaaactcttgaccgactctacctccttacttactcgtatcctcaaagccaaatatttcccgcgtagggatttcttggatg |
27644675 |
T |
|
| Q |
391 |
ccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctca |
490 |
Q |
| |
|
|| || || ||||||||||| ||||| ||||||||||| |||||||| || || |||||||| || || || |||||||| || ||||||| | |
|
|
| T |
27644674 |
cctctcttggtcataatccaagctatacttggaggagtctttggagtacccagcacttgcttaccttaggacacaggtggaagattggaaatggttccaa |
27644575 |
T |
|
| Q |
491 |
aattaatttgtggcgtatgccttggat |
517 |
Q |
| |
|
||| ||| ||||| |||||||||||| |
|
|
| T |
27644574 |
aataaatgtgtggactatgccttggat |
27644548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 402 - 520
Target Start/End: Original strand, 14647395 - 14647513
Alignment:
| Q |
402 |
cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaattaatttgt |
501 |
Q |
| |
|
||||||||||| || | |||||||||||| |||||||| |||||| | ||||||||||||||||||||||| || || |||||||| |||| ||| | | |
|
|
| T |
14647395 |
cataatccaagctacatatggaggagtctttggagtactcaatctctgcttaccttgggtcatagatggaaaattggagatggttcaaaaataaatgtat |
14647494 |
T |
|
| Q |
502 |
ggcgtatgccttggattcg |
520 |
Q |
| |
|
|| |||||| |||||||| |
|
|
| T |
14647495 |
ggtctatgccatggattcg |
14647513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 288 - 493
Target Start/End: Complemental strand, 13189746 - 13189541
Alignment:
| Q |
288 |
tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg |
387 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||| | | |||| | | | | |||||||||||| | ||| |||||||| || |||| |
|
|
| T |
13189746 |
tctatgcttggtaagaaaagttggaaactcttaaccgactcttctacgctacttacccgtgttcccaaagctaaatattccccacgaagggacttcttgg |
13189647 |
T |
|
| Q |
388 |
atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
|||| | |||||||||||||| || || ||||| ||||| |||||||| ||| |||||||||||||||| |||||||||| || || ||||| || |
|
|
| T |
13189646 |
atgcacctattggccataatccaagctacacttggagaagtctttggagtactcaacatttacttaccttgggttatagatggaaaattggagatggctc |
13189547 |
T |
|
| Q |
488 |
tcaaat |
493 |
Q |
| |
|
| |||| |
|
|
| T |
13189546 |
taaaat |
13189541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 414 - 503
Target Start/End: Original strand, 27465618 - 27465707
Alignment:
| Q |
414 |
tatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaattaatttgtgg |
503 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||||||||| ||||||||| |||||| || |||||||||||| | |||||| ||||| |
|
|
| T |
27465618 |
tatacttggaagagtctatggagtactcaatctttacttattttgggtcatgaatggaaaattggtgatggttcttatattaatgtgtgg |
27465707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 626
Target Start/End: Original strand, 50181776 - 50181834
Alignment:
| Q |
568 |
gaggatattacagttaattatttgttgaacccgggttggaattcttggaacatcccttt |
626 |
Q |
| |
|
|||||| |||| || |||||||||||||| |||| | |||| ||||||||||||||||| |
|
|
| T |
50181776 |
gaggatcttacggtcaattatttgttgaatccggatgggaactcttggaacatcccttt |
50181834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 279 - 522
Target Start/End: Original strand, 23149920 - 23150163
Alignment:
| Q |
279 |
tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg |
378 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||||| |||| || | ||||| ||||||||||||||||| | || ||||||| |
|
|
| T |
23149920 |
tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttccccgaaggg |
23150019 |
T |
|
| Q |
379 |
attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatagg |
478 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || || |
|
|
| T |
23150020 |
attttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattgg |
23150119 |
T |
|
| Q |
479 |
tgatggttctcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
|| ||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
23150120 |
agacggttctcaaattaatgtgtggagtatgccttggatccgca |
23150163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 297 - 487
Target Start/End: Complemental strand, 42578175 - 42577985
Alignment:
| Q |
297 |
ggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatgccaacc |
396 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||| ||||| | | ||||| |||||||||||| ||| |||||||||| ||||||||| | |
|
|
| T |
42578175 |
ggtaagcaaagttggaaactcctcaccgactcaaactccttacttactcgtgtcctcgaagctaaatacttccctagaagggatttcttggatgcccctc |
42578076 |
T |
|
| Q |
397 |
tcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
| |||||||||||||| || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
42578075 |
ttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcatagatggaagattggagatggttc |
42577985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 279 - 517
Target Start/End: Complemental strand, 13022350 - 13022112
Alignment:
| Q |
279 |
tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg |
378 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| | | ||||||||| ||||||| ||| ||||||| |
|
|
| T |
13022350 |
tttaatctctctatgcttggtaagcaaagttggaaactcttgaccgactctacctccttacttactcgtgtcctcaaagacaaatacttcccacgaaggg |
13022251 |
T |
|
| Q |
379 |
attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatagg |
478 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||| | ||| ||||||| ||| |||||||| ||| ||| ||||| |||||| |||||||||| || || |
|
|
| T |
13022250 |
atttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacattttcttactttgggttatagatggaaaattgg |
13022151 |
T |
|
| Q |
479 |
tgatggttctcaaattaatttgtggcgtatgccttggat |
517 |
Q |
| |
|
||| ||| | |||||||| | ||| |||||||||||| |
|
|
| T |
13022150 |
tgacggtacgaaaattaatgtttggaatatgccttggat |
13022112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 279 - 517
Target Start/End: Complemental strand, 13093874 - 13093636
Alignment:
| Q |
279 |
tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg |
378 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| | | ||||||||| ||||||| || ||||||| |
|
|
| T |
13093874 |
tttaatctctctatgcttggtaagcaaagttggaaactcttgaccgactctacctccttacttactcgtgtcctcaaagacaaatactttccacgaaggg |
13093775 |
T |
|
| Q |
379 |
attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatagg |
478 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||| | ||| ||||||| ||| |||||||| ||| ||| ||||| |||||| |||||||||| || || |
|
|
| T |
13093774 |
atttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacatttgcttactttgggttatagatggaaaattgg |
13093675 |
T |
|
| Q |
479 |
tgatggttctcaaattaatttgtggcgtatgccttggat |
517 |
Q |
| |
|
||| ||| | |||||||| ||||| |||||||||||| |
|
|
| T |
13093674 |
tgacggtacgaaaattaatgtgtggaatatgccttggat |
13093636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 355 - 496
Target Start/End: Original strand, 7273748 - 7273889
Alignment:
| Q |
355 |
aagctaaatactacccgcgaagggattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttac |
454 |
Q |
| |
|
|||| ||||| | ||| ||||||||||| ||||||||| ||||||||||||||||| || |||||||| || || |||||||||||| ||||||||| |
|
|
| T |
7273748 |
aagccaaatatttcccacgaagggatttcttggatgcctctctcggccataatccaagctacacatggagaagcctttggagtacacaacatttacttac |
7273847 |
T |
|
| Q |
455 |
cttgggtcatagatggaagataggtgatggttctcaaattaa |
496 |
Q |
| |
|
|||||||||| |||||||||| | |||||||| ||||||| |
|
|
| T |
7273848 |
cttgggtcatggatggaagattagagatggttccaaaattaa |
7273889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 402 - 484
Target Start/End: Complemental strand, 33496394 - 33496311
Alignment:
| Q |
402 |
cataatccaagttatacatggaggagtctatggagtacac-aatctttacttaccttgggtcatagatggaagataggtgatgg |
484 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||| | ||| ||| || || |||||||||||||||||||| || ||||| |
|
|
| T |
33496394 |
cataatccaagctacacatggaggagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg |
33496311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 7e-66; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 279 - 522
Target Start/End: Complemental strand, 12352166 - 12351923
Alignment:
| Q |
279 |
tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg |
378 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||||| |||| || | ||||| ||||||||||||||||| | || ||||||| |
|
|
| T |
12352166 |
tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttccccgaaggg |
12352067 |
T |
|
| Q |
379 |
attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatagg |
478 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || || |
|
|
| T |
12352066 |
attttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccatagctggaaaattgg |
12351967 |
T |
|
| Q |
479 |
tgatggttctcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
|| || |||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
12351966 |
agacggctctcaaattaatgtgtggagtatgccttggatccgca |
12351923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 279 - 522
Target Start/End: Original strand, 41146405 - 41146648
Alignment:
| Q |
279 |
tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg |
378 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||||| |||| || | ||||| ||||||||||||||||| | || ||||||| |
|
|
| T |
41146405 |
tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttccccgaaggg |
41146504 |
T |
|
| Q |
379 |
attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatagg |
478 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || || |
|
|
| T |
41146505 |
attttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattgg |
41146604 |
T |
|
| Q |
479 |
tgatggttctcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
|| ||||| | ||||||| ||||| ||||||||||||| |||| |
|
|
| T |
41146605 |
agacggttccctaattaatgtgtggagtatgccttggatccgca |
41146648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 278 - 519
Target Start/End: Original strand, 29843261 - 29843502
Alignment:
| Q |
278 |
ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg |
377 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| | |||||||||| | || ||||| |
|
|
| T |
29843261 |
ttttaacttttctatttttggtaagcaaagttaaaaactcttatccgagtcaacctctttaccatcaaggatcttggaagctaaatatttttcgagaagg |
29843360 |
T |
|
| Q |
378 |
gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatag |
477 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||| |||| | | ||||||||||| || |||||||||||||||| |||||||||| ||| |
|
|
| T |
29843361 |
gattttttggatgccaacctaggtcataatccaagttatacaaggagcaatatatggagtacaaaacctttacttaccttgggccatagatggacgatta |
29843460 |
T |
|
| Q |
478 |
gtgatggttctcaaattaatttgtggcgtatgccttggattc |
519 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
29843461 |
gtgatgattctcaaattaatgtgtggagtatgccttggattc |
29843502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 288 - 522
Target Start/End: Original strand, 46598459 - 46598693
Alignment:
| Q |
288 |
tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg |
387 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||||||||| |||||||| | | || ||||||||||||||||||| ||| || |||| || |||| |
|
|
| T |
46598459 |
tctatgctcggcaagcaaggttggaaactcttatccgactcctcctctttattcaccagaatcctcaaagctaaatacttccctagacgggacttcttgg |
46598558 |
T |
|
| Q |
388 |
atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
|||| | |||||| ||||||||||| ||||| |||||||| |||||||||| |||||||||||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
46598559 |
atgcaaccctcggtcataatccaagctatacctggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttc |
46598658 |
T |
|
| Q |
488 |
tcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
| | |||||| ||||| ||||||| ||||| |||| |
|
|
| T |
46598659 |
taagattaatgtgtggagtatgccgtggatccgca |
46598693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 288 - 522
Target Start/End: Original strand, 31801142 - 31801376
Alignment:
| Q |
288 |
tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg |
387 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||||||||| |||||||| | | || ||||||||||||||||||| ||| || ||| || |||| |
|
|
| T |
31801142 |
tctatgctcggcaagcaaggttggaaactcttatccgactcctcctctttattcaccagaatcctcaaagctaaatacttccctagactggacttcttgg |
31801241 |
T |
|
| Q |
388 |
atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
|||| | |||||| ||||||||||| ||||| |||||||| |||||||||| |||||||||||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
31801242 |
atgctaccctcggtcataatccaagctatacttggaggagcttatggagtactcaatctttacttactttgggccatagatggaagattggagatggttc |
31801341 |
T |
|
| Q |
488 |
tcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
| | |||||| ||||| ||||||| ||||| |||| |
|
|
| T |
31801342 |
taagattaatgtgtggagtatgccgtggatccgca |
31801376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 307 - 522
Target Start/End: Original strand, 512531 - 512746
Alignment:
| Q |
307 |
gttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatgccaacctcggccataa |
406 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | | || ||||||||||||||||||| ||| || |||| || |||||||| | |||||| ||||| |
|
|
| T |
512531 |
gttggaaactcttatccgactcctcctctttattcaccagaatcctcaaagctaaatacttccctagacgggacttcttggatgcaaccctcggtcataa |
512630 |
T |
|
| Q |
407 |
tccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaattaatttgtggcgt |
506 |
Q |
| |
|
|||||| ||||| || ||||| |||||||||| |||||||||||||| ||||| ||||||||||||| | ||||||||| | |||||| ||||| || |
|
|
| T |
512631 |
tccaagctatacctgaaggagcttatggagtactcaatctttacttactttgggccatagatggaagaatgtagatggttctaagattaatgtgtggagt |
512730 |
T |
|
| Q |
507 |
atgccttggattcgca |
522 |
Q |
| |
|
|| || ||||| |||| |
|
|
| T |
512731 |
attccgtggatccgca |
512746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 295 - 475
Target Start/End: Complemental strand, 18222902 - 18222722
Alignment:
| Q |
295 |
ttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatgccaa |
394 |
Q |
| |
|
|||||||||||||||| |||||||| |||| || |||| ||||| | | ||||| |||| ||||| | ||||||||||||||| ||||||||| |
|
|
| T |
18222902 |
ttggtaagcaaagttgaaaactcttgaccgaatctacctgcttacttactcgtatcctgaaagtcaaatatttcccgcgaagggatttcttggatgcctc |
18222803 |
T |
|
| Q |
395 |
cctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagat |
475 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
18222802 |
tctcggccataatccaagctatacttggaggagtctttggagtattcaatcattacttaccttggggcatagatggaagat |
18222722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 279 - 481
Target Start/End: Original strand, 43968699 - 43968901
Alignment:
| Q |
279 |
tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg |
378 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||||| ||||||| ||||| ||||| | | ||||| |||| ||||||| ||| ||||||| |
|
|
| T |
43968699 |
tttaatctatctatgcttggtaagcaaagtttgaaactcttgaccgactctacctccttacttactcgtgtcctcgaagccaaatacttcccacgaaggg |
43968798 |
T |
|
| Q |
379 |
attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatagg |
478 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||| | ||| || |||||||| |||||||| ||| ||| ||||| |||||| ||| |||||| || || |
|
|
| T |
43968799 |
atttcttggatgcctccctcggtcataatccaagctttacttgaaggagtctttggagtactcaacatttgcttactttgggttatatatggaaaattgg |
43968898 |
T |
|
| Q |
479 |
tga |
481 |
Q |
| |
|
||| |
|
|
| T |
43968899 |
tga |
43968901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 603
Target Start/End: Original strand, 29843541 - 29843585
Alignment:
| Q |
559 |
gtgcaccatgaggatattacagttaattatttgttgaacccgggt |
603 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
29843541 |
gtgcaccatgaggatgttaccgttaattatttgttgaatccgggt |
29843585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 279 - 522
Target Start/End: Original strand, 32498197 - 32498440
Alignment:
| Q |
279 |
tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg |
378 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||||| |||| || | ||||| ||||||||||||||||| | || ||||||| |
|
|
| T |
32498197 |
tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttccccgaaggg |
32498296 |
T |
|
| Q |
379 |
attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatagg |
478 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || || |
|
|
| T |
32498297 |
attttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattgg |
32498396 |
T |
|
| Q |
479 |
tgatggttctcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
|| ||||| | ||||||| ||||| ||||||||||||| |||| |
|
|
| T |
32498397 |
agacggttccctaattaatgtgtggagtatgccttggatccgca |
32498440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 1164311 - 1164176
Alignment:
| Q |
17 |
atgaaaatgatagaacaagttgcatggagagtaggattgctcactggccgagttgagtctgtttggattataaaaatgt-ctatctatcaaaatcgaacc |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| | ||| |||||||| || ||||| ||||||||| |
|
|
| T |
1164311 |
atgaaaatgatagaactagttgcatggagagtaggattgctcaccggccgggttgagtctgtttaggttaaaaaaatgtaggatatatcacaatcgaacc |
1164212 |
T |
|
| Q |
116 |
aaactaatcc-gttgatgaacaagtattgaacttaa |
150 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
1164211 |
aaaccaatcctgttgatgaacaagtattgaacttaa |
1164176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 288 - 452
Target Start/End: Complemental strand, 23601500 - 23601337
Alignment:
| Q |
288 |
tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg |
387 |
Q |
| |
|
|||||| |||| ||| ||| ||||||| ||| || ||||| |||||| |||| | ||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
23601500 |
tctatgattggaaagaaaatttggaaaatctaatttgactccacctctctactcacctggatcctcaaagctaaatacttcccgcgaagggatttcttgg |
23601401 |
T |
|
| Q |
388 |
atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttactt |
452 |
Q |
| |
|
||| |||||| ||||||||||||| ||||| ||| ||||| | | ||| || |||||||||||| |
|
|
| T |
23601400 |
atgtcaaccttggccataatccaacctatacctgg-ggagtttgttgagcactcaatctttactt |
23601337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 405 - 517
Target Start/End: Complemental strand, 54422713 - 54422601
Alignment:
| Q |
405 |
aatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaattaatttgtggc |
504 |
Q |
| |
|
|||||||| || || || ||||||||||||||| | |||||| | ||||||||||| |||||||||||||| |||||||| || |||||||| ||||| |
|
|
| T |
54422713 |
aatccaagctacacttgaaggagtctatggagtgcccaatctctgcttaccttggggcatagatggaagatcggtgatggctcaaaaattaatatgtgga |
54422614 |
T |
|
| Q |
505 |
gtatgccttggat |
517 |
Q |
| |
|
||||||||||||| |
|
|
| T |
54422613 |
gtatgccttggat |
54422601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 511
Target Start/End: Original strand, 33707464 - 33707597
Alignment:
| Q |
378 |
gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatag |
477 |
Q |
| |
|
||||| |||| |||||| || ||||| |||||||||||||| ||||||||||| || ||||| || |||||||| | | || ||| |||||||||| | |
|
|
| T |
33707464 |
gatttcttgggtgccaatcttggccacaatccaagttatacgtggaggagtctctgaagtacctaaaatttacttatcatagggcatggatggaagattg |
33707563 |
T |
|
| Q |
478 |
gtgatggttctcaaattaatttgtggcgtatgcc |
511 |
Q |
| |
|
||||||| ||| |||| ||| ||| | ||||||| |
|
|
| T |
33707564 |
gtgatggctctgaaatcaatgtgttgagtatgcc |
33707597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 503
Target Start/End: Original strand, 43732690 - 43732791
Alignment:
| Q |
402 |
cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaattaatttgt |
501 |
Q |
| |
|
||||||||||| || || ||||| ||||| |||||| | ||| ||| |||| |||||||||||||||||||| ||| ||||| | |||||||| ||| |
|
|
| T |
43732690 |
cataatccaagctacacttggagaagtctttggagtgcccaacacttagttactttgggtcatagatggaagattggtaatggtaccaaaattaatgtgt |
43732789 |
T |
|
| Q |
502 |
gg |
503 |
Q |
| |
|
|| |
|
|
| T |
43732790 |
gg |
43732791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 279 - 522
Target Start/End: Complemental strand, 2500643 - 2500401
Alignment:
| Q |
279 |
tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg |
378 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||||| |||| || | ||||| |||| |||||||||||| | || ||||||| |
|
|
| T |
2500643 |
tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcc-caaagctaaatattttccccgaaggg |
2500545 |
T |
|
| Q |
379 |
attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagatagg |
478 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || || |
|
|
| T |
2500544 |
attttttagatgccaatctaggccataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattgg |
2500445 |
T |
|
| Q |
479 |
tgatggttctcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
|| || |||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
2500444 |
agacggctctcaaattaatgtgtggagtatgccttggatccgca |
2500401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 285 - 487
Target Start/End: Complemental strand, 52966278 - 52966076
Alignment:
| Q |
285 |
ctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttt |
384 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| | ||||||||| || ||||| | | | ||| |||||||||||| ||| |||||||||| | |
|
|
| T |
52966278 |
ctctcaatgcttgttaagcaaagttggaaactcctcaccgactcaaattccttacttactcgtgttctctaagctaaatacttccctagaagggatttct |
52966179 |
T |
|
| Q |
385 |
tggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatgg |
484 |
Q |
| |
|
|||||||| || |||||||||||||| || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
52966178 |
tggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcatagatggaagattggagatgg |
52966079 |
T |
|
| Q |
485 |
ttc |
487 |
Q |
| |
|
||| |
|
|
| T |
52966078 |
ttc |
52966076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 4755781 - 4755664
Alignment:
| Q |
376 |
gggattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagat |
475 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||| ||| |||||||| | | || |||||||||||||| |
|
|
| T |
4755781 |
gggattttttggatgccaaccttggctataatccaagctatacatggaggagtctttggagtacccaaaatttacttatcataggccatagatggaagat |
4755682 |
T |
|
| Q |
476 |
aggtgatggttctcaaat |
493 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
4755681 |
tggtgatgtttctaaaat |
4755664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 282 - 517
Target Start/End: Original strand, 6864369 - 6864603
Alignment:
| Q |
282 |
aacctctctatgcttggtaagcaaagttggaaact-cttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggat |
380 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| || ||| ||||| |||||||||| | || ||||||||| |||||| | ||| ||| ||||| |
|
|
| T |
6864369 |
aacctctctatgcttggtaagcaacgctggaaacttctcatc-gactccacctctttacatgctagagtcctcaaagttaaatatttcccccgacgggat |
6864467 |
T |
|
| Q |
381 |
tttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtg |
480 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||| ||| |||||||||| | || | |||| ||||||| |||| |
|
|
| T |
6864468 |
tttttggatgccaaccttggccacaatccaagctatacgtggagccatcattggagtatccaaaatttacttaccataggccttagaaggaagatcggtg |
6864567 |
T |
|
| Q |
481 |
atggttctcaaattaatttgtggcgtatgccttggat |
517 |
Q |
| |
|
|||||||| |||| ||| ||||| ||||||| ||||| |
|
|
| T |
6864568 |
atggttct-aaatcaatgtgtggagtatgccatggat |
6864603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 402 - 487
Target Start/End: Complemental strand, 51141446 - 51141361
Alignment:
| Q |
402 |
cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
|||||||||||||| |||||||| | ||| |||||||| |||| | | |||||||||||||||||||||||||| || |||||||| |
|
|
| T |
51141446 |
cataatccaagttacacatggagaattctttggagtactcaatatctgcttaccttgggtcatagatggaagattggagatggttc |
51141361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 520
Target Start/End: Original strand, 2332392 - 2332530
Alignment:
| Q |
381 |
tttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtg |
480 |
Q |
| |
|
|||||||||| | | ||||| ||||||||||| ||||| ||||||||||| |||||||| || ||||||||||||| | |||||||||| || |||| |
|
|
| T |
2332392 |
tttttggatgtccatctcggtcataatccaagctatacttggaggagtctttggagtac-taacatttacttaccttgtattatagatggaaaattggtg |
2332490 |
T |
|
| Q |
481 |
atggttctcaaattaatttgtggcgtatgccttggattcg |
520 |
Q |
| |
|
|||| ||| |||||||| ||||| ||||||||| |||| |
|
|
| T |
2332491 |
atggctctaaaattaatgtgtggaaaatgccttggcttcg |
2332530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 503
Target Start/End: Complemental strand, 24596185 - 24596087
Alignment:
| Q |
405 |
aatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttctcaaattaatttgtgg |
503 |
Q |
| |
|
|||||||| || |||||||||||||| |||||| | |||||||||||||| |||| | | |||||||||| | | ||||||| |||||||| ||||| |
|
|
| T |
24596185 |
aatccaagctacacatggaggagtctttggagtgcccaatctttacttactttggaccttcgatggaagattgttaatggttcgaaaattaatgtgtgg |
24596087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 39695704 - 39695667
Alignment:
| Q |
282 |
aacctctctatgcttggtaagcaaagttggaaactctt |
319 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
39695704 |
aacctatctatgtttggtaagcaaagttggaaactctt |
39695667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 288 - 497
Target Start/End: Complemental strand, 189794 - 189589
Alignment:
| Q |
288 |
tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg |
387 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| ||||||||| || |||||| |||||||||| |||||| | ||||| | ||||||||| | |
|
|
| T |
189794 |
tctatgcttggtaagcaaaggtggaagctcttatc----tcaacctctctattatcaaagatcctcaaatttaaatatttcccgcaatgggatttttcgt |
189699 |
T |
|
| Q |
388 |
atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
||||||| || || ||||||||||||| ||||||||||||||| | |||||| ||||||||||| |||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
189698 |
atgccaatctaggacataatccaagttttacatggaggagtcttttgagtactcaatctttactcaccttgggacatagatggatgattggtgatggttc |
189599 |
T |
|
| Q |
488 |
tcaaattaat |
497 |
Q |
| |
|
||||||||| |
|
|
| T |
189598 |
ccaaattaat |
189589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 288 - 522
Target Start/End: Complemental strand, 1095 - 861
Alignment:
| Q |
288 |
tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg |
387 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | | ||||||| || ||||| | | |||||||||| ||||| | ||| ||| ||||||| |||| |
|
|
| T |
1095 |
tctatgctcggtaagcaaagttggaaactcatgacagactcaaattccttacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttgg |
996 |
T |
|
| Q |
388 |
atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtgatggttc |
487 |
Q |
| |
|
| || || || ||||||||||| ||||||||||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||| ||| ||||||| |
|
|
| T |
995 |
aagcacctcttggtcataatccaagctatacatggaggagtctttggagtatccaatcattacttacgttgggctatagatggaagattggtaatggttc |
896 |
T |
|
| Q |
488 |
tcaaattaatttgtggcgtatgccttggattcgca |
522 |
Q |
| |
|
| || ||| ||||| |||||||||||||||| |
|
|
| T |
895 |
aaatataaatgtgtggtcaatgccttggattcgca |
861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 402 - 472
Target Start/End: Original strand, 4243154 - 4243224
Alignment:
| Q |
402 |
cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa |
472 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
4243154 |
cataatccaagctatacatggaggagtctatggagtactcaatctttgctcactttgggtcatagatggaa |
4243224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 472
Target Start/End: Original strand, 647188 - 647375
Alignment:
| Q |
285 |
ctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttt |
384 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| || ||||||| | || |||| | | |||||||||| ||||||| ||| || | ||||| | |
|
|
| T |
647188 |
ctctcaatgcttggtaagcaaagctggaaactcctaaccgactctaattccatacttactcgcgtcctcaaagccaaatacttccctagacgagatttct |
647287 |
T |
|
| Q |
385 |
tggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa |
472 |
Q |
| |
|
|||| ||| || ||||| || ||||| || || |||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
647288 |
tggaggcccctctgggccacaacccaagctacacttggaggagtctatggagtactcaatctttacttacattgggatatagatggaa |
647375 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 351 - 503
Target Start/End: Complemental strand, 42704085 - 42703933
Alignment:
| Q |
351 |
ctcaaagctaaatactacccgcgaagggattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttac |
450 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||| | | | |||||||||||||| | ||| ||||| ||||| |||||||| ||| || | |
|
|
| T |
42704085 |
ctcaaagccaaatattacccgcgaagggatttcttggaggtccctattggccataatccaagctttacttggagaagtctttggagtacccaacacttgc |
42703986 |
T |
|
| Q |
451 |
ttaccttgggtcatagatggaagataggtgatggttctcaaattaatttgtgg |
503 |
Q |
| |
|
|||| |||||||||| || |||||| ||||||||| | |||||||| ||||| |
|
|
| T |
42703985 |
ttacattgggtcatatattgaagattggtgatggtgccaaaattaatgtgtgg |
42703933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 487
Target Start/End: Complemental strand, 238117 - 237912
Alignment:
| Q |
282 |
aacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggatt |
381 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||| || | || | | ||| ||||| | | || |||||||||||||| | ||| || |||||| |
|
|
| T |
238117 |
aacctctctatgcttggttaacaaggttggaaactcctaactgatcctagctccttactcactcgaattctcaaagctaaatatttccctcgtcgggatt |
238018 |
T |
|
| Q |
382 |
ttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaagataggtga |
481 |
Q |
| |
|
| ||||||||||| | ||||| |||||||| | || |||||||| |||||||| | |||||| | || |||||||| ||||||||||||| ||||| |
|
|
| T |
238017 |
tcttggatgccaatattggccacaatccaagcttcacttggaggagcatatggagttctcaatctcttctaaccttgggctatagatggaagattggtga |
237918 |
T |
|
| Q |
482 |
tggttc |
487 |
Q |
| |
|
||||| |
|
|
| T |
237917 |
cggttc |
237912 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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