View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_52 (Length: 287)
Name: NF3273_low_52
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 31300447 - 31300715
Alignment:
| Q |
1 |
tgggttgctttccgacatgaagagaagcagacaacttcgtcaagtttgttgataatgtgttaggtggtttcagacaagatagtctaagttatggaataga |
100 |
Q |
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| T |
31300447 |
tgggttgctttccgacatgaagagaagcagacaacttcgtcaagtttgttgatactgtgttaggtggtttcagataagatagtctgagttatggaataga |
31300546 |
T |
|
| Q |
101 |
ttattttgaggagaaagacaaaaggatggtggccattttaagtggctccctataataaggatacaatgaatgtttcgtgagataaacacacataaaagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31300547 |
ttattttgaggagaaagacaaaaggatggtggccatctgaagtggctccctataataaggatacaatgaatgtttcgtgagataaacacacataaaagtc |
31300646 |
T |
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| Q |
201 |
acctccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttgacattgttcttag |
269 |
Q |
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| T |
31300647 |
acctccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttgacactgttcttag |
31300715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 53388975 - 53388920
Alignment:
| Q |
204 |
tccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttgaca |
259 |
Q |
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|||||| ||||||||| |||||||| | |||||||||||||| |||||||||||| |
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| T |
53388975 |
tccctctatgtcgacctccatgttttatgaagcttcccttgtggctgaagttgaca |
53388920 |
T |
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