View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_54 (Length: 282)
Name: NF3273_low_54
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 46734201 - 46734480
Alignment:
| Q |
17 |
aaatgctagcgagaataagaaaggagaagatttcattttactaaagaccgaatgtcaaagagtcgtttgtgatggtgtttctacgtattctgtctttggg |
116 |
Q |
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| T |
46734201 |
aaatgctagcgagaataagaaaggagaagatttcattttactaaagaccgaatgtcaaagagtcgtttgtgatggtgtttctacgtattctgtctttggg |
46734300 |
T |
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| Q |
117 |
gtatgtttctttcttaactcttcaaattttgctttttta---------------------aatctttgtagcacagaaggcatgctcggtgtctagagtg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
46734301 |
gtatgtttctttcttaactcttcaaattttgcttttttaaattctaatttcatgggttgtaatctttgtagcacagaaagcatgctcggtgtctagagtg |
46734400 |
T |
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| Q |
196 |
tctgttaccaacacggacacacatgattacattcaattaatatatttttactagcgtcgagttgttgtctgatgtctgtg |
275 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734401 |
tctgttaccaacacagacacacatgattacattcaattaatatatttttactagcgtcgagttgttgtctgatgtctgtg |
46734480 |
T |
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