View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_60 (Length: 258)
Name: NF3273_low_60
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 36135071 - 36134826
Alignment:
| Q |
1 |
cccattagagtaaggtatttctaagcagttcatctagaaatttgttcgagcaagagaacatttttgacaatatagcccnnnnnnngtgaatatataatgg |
100 |
Q |
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| T |
36135071 |
cccattagagtaaggtatttctaagcagttcatctagaaatttgttcgagcaagagaacatttttgacaatatagcccaaaaaaagtgaatatataatgg |
36134972 |
T |
|
| Q |
101 |
attaacacattccattgttcaaaacaagctacatcatcaaacattcttcattcttgctactggctcatctcaatcacaaagtacacaaatacacatattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36134971 |
attaacacattccattgttcaaaacaagctacatcatcaaacattcttcattcttgctactggctcatctcaatcacaaagtacacaaatacacatattg |
36134872 |
T |
|
| Q |
201 |
aattggaaaattttgcattgatattagaaatcgctaacaatattca |
246 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36134871 |
aatttgaaaattttacattgatattagaaatcgctaacaatattca |
36134826 |
T |
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