View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_61 (Length: 253)

Name: NF3273_low_61
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_61
NF3273_low_61
[»] chr2 (22 HSPs)
chr2 (5-252)||(43943485-43943732)
chr2 (1-111)||(41181370-41181484)
chr2 (1-79)||(45475409-45475487)
chr2 (1-110)||(35493367-35493480)
chr2 (1-107)||(2917620-2917730)
chr2 (1-81)||(1096562-1096642)
chr2 (1-61)||(9660081-9660141)
chr2 (1-76)||(2648770-2648845)
chr2 (1-71)||(12905526-12905596)
chr2 (1-71)||(27276400-27276470)
chr2 (1-71)||(43950268-43950337)
chr2 (1-110)||(25184856-25184968)
chr2 (1-52)||(23409527-23409578)
chr2 (4-71)||(35490657-35490724)
chr2 (1-79)||(19187249-19187327)
chr2 (1-35)||(19469997-19470031)
chr2 (1-55)||(38945755-38945809)
chr2 (1-71)||(41500260-41500330)
chr2 (1-79)||(43493283-43493361)
chr2 (6-71)||(8268780-8268845)
chr2 (1-61)||(28342510-28342570)
chr2 (1-53)||(41004524-41004575)
[»] chr5 (17 HSPs)
chr5 (1-138)||(18538361-18538502)
chr5 (1-110)||(18310047-18310160)
chr5 (1-110)||(20192287-20192400)
chr5 (1-110)||(20200174-20200287)
chr5 (1-110)||(3603174-3603287)
chr5 (1-83)||(33995174-33995256)
chr5 (1-83)||(41201693-41201775)
chr5 (1-78)||(25499913-25499990)
chr5 (1-84)||(24053144-24053227)
chr5 (1-71)||(34122501-34122571)
chr5 (1-112)||(34682189-34682304)
chr5 (1-66)||(1397376-1397441)
chr5 (7-71)||(1398581-1398645)
chr5 (1-55)||(19228672-19228726)
chr5 (1-71)||(41798795-41798865)
chr5 (2-71)||(33993257-33993326)
chr5 (3-71)||(34123963-34124031)
[»] chr3 (37 HSPs)
chr3 (5-110)||(7247890-7247999)
chr3 (1-110)||(41579750-41579863)
chr3 (1-79)||(28611126-28611204)
chr3 (5-110)||(2432973-2433082)
chr3 (1-83)||(45101874-45101956)
chr3 (1-83)||(46344902-46344984)
chr3 (1-83)||(19440221-19440303)
chr3 (1-112)||(19454351-19454466)
chr3 (1-83)||(29918367-29918449)
chr3 (1-83)||(29929391-29929473)
chr3 (1-83)||(29967520-29967602)
chr3 (1-83)||(29978545-29978627)
chr3 (1-107)||(30256029-30256139)
chr3 (1-107)||(52570592-52570701)
chr3 (3-78)||(43571713-43571788)
chr3 (1-71)||(66878-66947)
chr3 (5-71)||(34691602-34691668)
chr3 (1-71)||(41802975-41803045)
chr3 (1-71)||(49219817-49219887)
chr3 (1-61)||(7839525-7839585)
chr3 (1-61)||(19341620-19341680)
chr3 (1-110)||(52567697-52567810)
chr3 (3-71)||(55207691-55207759)
chr3 (1-56)||(2743390-2743445)
chr3 (1-55)||(4002531-4002585)
chr3 (1-71)||(7841098-7841168)
chr3 (1-55)||(13743286-13743340)
chr3 (1-71)||(23443132-23443202)
chr3 (1-83)||(42804420-42804502)
chr3 (1-55)||(45098825-45098878)
chr3 (4-49)||(20366191-20366236)
chr3 (39-80)||(42807664-42807705)
chr3 (1-61)||(6505977-6506037)
chr3 (39-71)||(7843081-7843113)
chr3 (1-61)||(48250895-48250955)
chr3 (1-49)||(50216880-50216928)
chr3 (1-61)||(55267428-55267488)
[»] chr1 (28 HSPs)
chr1 (1-110)||(46141716-46141829)
chr1 (1-107)||(46973141-46973251)
chr1 (1-107)||(13173773-13173882)
chr1 (1-83)||(4515991-4516078)
chr1 (6-110)||(6437570-6437678)
chr1 (1-83)||(36908543-36908625)
chr1 (1-83)||(41804059-41804141)
chr1 (39-87)||(25040140-25040188)
chr1 (1-110)||(49927539-49927652)
chr1 (8-83)||(35521579-35521654)
chr1 (4-110)||(18975149-18975259)
chr1 (6-71)||(19054036-19054101)
chr1 (1-71)||(6562187-6562257)
chr1 (1-71)||(23276134-23276204)
chr1 (1-71)||(27485036-27485106)
chr1 (1-71)||(30905748-30905818)
chr1 (2-71)||(23272826-23272895)
chr1 (1-83)||(26633495-26633574)
chr1 (1-35)||(36076584-36076618)
chr1 (1-55)||(44470037-44470091)
chr1 (1-55)||(51289986-51290040)
chr1 (1-54)||(15047276-15047329)
chr1 (1-78)||(19495037-19495113)
chr1 (1-50)||(27115849-27115898)
chr1 (4-61)||(51288874-51288931)
chr1 (1-61)||(29438046-29438106)
chr1 (5-49)||(51337543-51337587)
chr1 (1-61)||(52802117-52802177)
[»] chr4 (14 HSPs)
chr4 (1-107)||(29700328-29700438)
chr4 (1-107)||(4768615-4768725)
chr4 (1-110)||(49572926-49573039)
chr4 (4-71)||(34154431-34154498)
chr4 (1-107)||(37959746-37959856)
chr4 (1-83)||(955757-955839)
chr4 (1-71)||(11494521-11494590)
chr4 (1-71)||(21472510-21472580)
chr4 (1-83)||(958620-958701)
chr4 (1-71)||(9889971-9890041)
chr4 (1-79)||(18578618-18578696)
chr4 (1-82)||(51426503-51426584)
chr4 (1-61)||(50274747-50274807)
chr4 (7-83)||(21470868-21470944)
[»] chr8 (16 HSPs)
chr8 (1-110)||(18438568-18438681)
chr8 (1-107)||(7168025-7168135)
chr8 (1-110)||(18441467-18441580)
chr8 (1-80)||(38872956-38873035)
chr8 (1-110)||(41858147-41858260)
chr8 (5-79)||(22577634-22577708)
chr8 (1-71)||(42602437-42602507)
chr8 (1-81)||(45454373-45454453)
chr8 (1-56)||(21406259-21406314)
chr8 (1-56)||(21800751-21800806)
chr8 (1-80)||(35940407-35940486)
chr8 (28-71)||(35966802-35966845)
chr8 (1-71)||(1114720-1114790)
chr8 (3-53)||(18205781-18205831)
chr8 (1-71)||(41855345-41855415)
chr8 (1-55)||(42605260-42605314)
[»] chr7 (22 HSPs)
chr7 (1-110)||(48314608-48314720)
chr7 (1-110)||(21185553-21185666)
chr7 (1-107)||(9494832-9494942)
chr7 (4-110)||(46863373-46863483)
chr7 (1-110)||(28980199-28980312)
chr7 (1-71)||(27453620-27453690)
chr7 (1-82)||(10705214-10705295)
chr7 (1-82)||(37340268-37340349)
chr7 (6-83)||(46860476-46860553)
chr7 (5-110)||(34622433-34622542)
chr7 (1-110)||(36392059-36392172)
chr7 (1-47)||(21188426-21188472)
chr7 (1-71)||(30355265-30355335)
chr7 (1-112)||(36186499-36186613)
chr7 (1-83)||(47060892-47060973)
chr7 (1-110)||(41047712-41047824)
chr7 (1-56)||(618751-618806)
chr7 (1-71)||(29593354-29593424)
chr7 (1-83)||(42681959-42682041)
chr7 (1-71)||(47776309-47776379)
chr7 (42-83)||(36185801-36185842)
chr7 (1-54)||(45361643-45361696)
[»] chr6 (11 HSPs)
chr6 (2-109)||(13404659-13404770)
chr6 (9-83)||(12783991-12784065)
chr6 (1-71)||(35021289-35021359)
chr6 (4-107)||(13479663-13479770)
chr6 (1-71)||(23958867-23958937)
chr6 (3-79)||(23986009-23986085)
chr6 (1-110)||(25141105-25141218)
chr6 (4-61)||(13401473-13401530)
chr6 (1-61)||(7361178-7361238)
chr6 (1-61)||(31768740-31768800)
chr6 (1-61)||(7537185-7537245)
[»] scaffold0618 (1 HSPs)
scaffold0618 (1-83)||(3851-3932)
[»] scaffold0388 (1 HSPs)
scaffold0388 (4-78)||(11739-11813)
[»] scaffold0341 (1 HSPs)
scaffold0341 (1-71)||(17377-17447)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-71)||(232525-232595)
[»] scaffold0340 (1 HSPs)
scaffold0340 (1-61)||(1207-1266)
[»] scaffold0184 (1 HSPs)
scaffold0184 (1-61)||(18018-18078)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-61)||(54766-54826)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 43943732 - 43943485
Alignment:
Q  5 cagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggctgcaatgtgtcaacaaca 104  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||||||  ||||| ||||||||||||||||| || ||||||||||||||||||||    
T  43943732 cagttaactgcagccggttattaaattcctcgagagttaactgctgagggggaaaaatcgtattttatttgtgtgcttcagctgcaatgtgtcaacaaca 43943633  T
Q  105 attctccacttaatttgggtcggagagagtaatagnnnnnnnnnncttcggagagagtaatagnnnnnnnaataagacagtattatcactaacgtaaatt 204  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  43943632 attctccacttaatttgggtcggagagagtaatagttttttttttcttcggagagagtaatagtttttttaataagacagtattatcactaacgtaaatt 43943533  T
Q  205 tcttagcctcttaaaaaattgtctattgattcattaactagtgctata 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43943532 tcttagcctcttaaaaaattgtctattgattcattaactagtgctata 43943485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 41181484 - 41181370
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||| || |||||||||||||||||||| | ||||||||||||||||| |||||  |||||||| | ||||||||| ||    ||||||||||    
T  41181484 tcggcagttaaatgtagccggttattgaattcctcggcagttaactgccgagggggcaaaaacgtattttactcgtgtgcctcagccttatgcaatgtgt 41181385  T
Q  97 caacaacaattctcc 111  Q
    ||||| |||||||||    
T  41181384 caacatcaattctcc 41181370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 45475487 - 45475409
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 79  Q
    |||||||||||||| |||||||| ||||||| ||| | ||||||||||||||||| |||||| |||||||| |||||||    
T  45475487 tcggcagttaactgtagccggtttttgaatttctcggcagttaactgccgagggggcaaaatcgtattttacttgtgtg 45475409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 35493367 - 35493480
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||||||| |||| ||||||||||| | |||||||| |||||||| |||||  |||||||| | ||||| |||  |    ||||||||||    
T  35493367 tcggcagttaactgcagctggtttttgaattcctcggcagttaactaccgagggggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtgt 35493466  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  35493467 caacaacaattctc 35493480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2917730 - 2917620
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||| |||||||| || |||| ||| | ||||||||||||||||| |||||  |||||||| || |||||||| ||    || |||||||    
T  2917730 tcggcagttaactgtagccggtttttcaatttctcggcagttaactgccgagggggcaaaaacgtattttacttttgtgcctcagccttatgaaatgtgt 2917631  T
Q  97 caacaacaatt 107  Q
    |||||||||||    
T  2917630 caacaacaatt 2917620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 1096642 - 1096562
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcc 81  Q
    ||||||||||||||||||||| | |  |||||||| | ||||||| ||||||||| |||||| |||||||| | |||||||    
T  1096642 tcggcagttaactgcagccggatttcaaattcctcggcagttaacagccgagggggcaaaatcgtattttactagtgtgcc 1096562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9660081 - 9660141
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||||||| |||||||||||||||||| ||||||| | |||||||||||||| || |||||    
T  9660081 tcggcagtcaactgcagccggttattgtattcctcggcagttaactgccgagagggcaaaa 9660141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2648845 - 2648770
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgt 76  Q
    |||| |||||||||||||||||| ||||||||||  | |||||||||||||| || |||||  ||||||| |||||    
T  2648845 tcggtagttaactgcagccggtttttgaattccttggcagttaactgccgagagggcaaaagcgtattttttttgt 2648770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12905596 - 12905526
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||||| || || |||| ||| | |||||||||||||||||| ||||  ||||||||    
T  12905596 tcggcagttaactgcagccgatttttcaatttctcggcagttaactgccgaggggaaaaaagcgtatttta 12905526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27276400 - 27276470
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||||||||||||  ||||| ||||||||    
T  27276400 tcggcagttaactgcagccggatttcaaattcctcagcagttaactgccgagggggtaaaatcgtatttta 27276470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 43950268 - 43950337
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||| ||||| ||||| ||||||||| | | ||||||||||||||||| ||||| |||||||||    
T  43950268 tcggcagttaattgcagtcggtt-ttgaattccacagcagttaactgccgagggggcaaaaatgtatttta 43950337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25184856 - 25184968
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||| |  ||||||||   |||||||||| |||||| |||||  |||||||| | |||||||||  |    |||||| |||    
T  25184856 tcggcagttaactgcagccggtt-tcaaattcctcgacagttaactgctgagggggcaaaaacgtattttactcgtgtgcctcaaccttatgcaatctgt 25184954  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  25184955 caacaacaattctc 25184968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23409527 - 23409578
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgag 52  Q
    ||||||||||||||||||| ||| ||||||||||| | | ||||||||||||    
T  23409527 tcggcagttaactgcagccagtttttgaattcctcggcaattaactgccgag 23409578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 35490724 - 35490657
Alignment:
Q  4 gcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||||| |||||||| || | ||||||| | ||||| | ||||| |||||||||    
T  35490724 gcagttaactgcagccggtttttgaattcttcggcagttaaccgtcgaggaggcaaaaatgtatttta 35490657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 19187249 - 19187327
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 79  Q
    ||||||| |||||||| | || | ||||||| ||| | ||||||||||||||||| |||||  |||||||| |||||||    
T  19187249 tcggcaggtaactgcaactggattttgaatttctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtg 19187327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19470031 - 19469997
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  19470031 tcggcagttaactgcaaccggttattgaattcctc 19469997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38945809 - 38945755
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggg 55  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||||||||||||    
T  38945809 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggg 38945755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 41500260 - 41500330
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |||||||| |    ||||||||||||||||| |||||  ||||||||    
T  41500260 tcggcagttaactgcagccggattttgaattctttgatagttaactgccgagggggcaaaagcgtatttta 41500330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 43493283 - 43493361
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 79  Q
    ||||||||||  |||||||| || || |||||||  | ||||||||||||||||| |||||  |||||||| |||||||    
T  43493283 tcggcagttatttgcagccgattttttaattccttagcagttaactgccgagggggcaaaaacgtattttacttgtgtg 43493361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 8268780 - 8268845
Alignment:
Q  6 agttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||| |||||||| || ||| ||||||    |||||||||||||||||||||||| ||||||||    
T  8268780 agttaattgcagccgatttttgcattccttaacagttaactgccgaggggacaaaatcgtatttta 8268845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28342570 - 28342510
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    ||||||||||| ||||||||||| |||||||| ||   ||||||||||||| ||| |||||    
T  28342570 tcggcagttaattgcagccggtttttgaattcttcgacagttaactgccgaaggggcaaaa 28342510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41004575 - 41004524
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagg 53  Q
    ||||||||||||||||||||||||   |||||||| | |||||||||||||||    
T  41004575 tcggcagttaactgcagccggtta-caaattcctcggcagttaactgccgagg 41004524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 18538361 - 18538502
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||| |||||||||||   | ||||||||||||||| |||||| |||||||| ||||||||||| ||    || |||||||    
T  18538361 tcggcagttaactgcagccggtttttgaattcctcgacaattaactgccgagggggcaaaatcgtattttacttgtgtgcctcagcctaatgaaatgtgt 18538460  T
Q  97 caacaacaattctccacttaatttgggtcggagagagtaata 138  Q
    ||||||||||| |||||||| ||| || ||||  ||||||||    
T  18538461 caacaacaattttccacttatttttggacggaaggagtaata 18538502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18310047 - 18310160
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||| |||||||||||||||||   |||||||||| |||| | |||||  |||||||| ||||||||||| ||    ||||||||||    
T  18310047 tcggcagttaactgcagtcggttattgaattcctcgacagttaactgctgaggaggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgt 18310146  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  18310147 caacaacaattctc 18310160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20192400 - 20192287
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||||||||| ||||||||||| || | ||||||||| ||| ||| |||||| |||||||| ||||||||||| ||    || |||||||    
T  20192400 tcggcagttaactgcagccgattattgaattcttcagcagttaactgacgaaggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatgtgt 20192301  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  20192300 caacaacaattctc 20192287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20200174 - 20200287
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||||||  |||||||||||| ||    ||||||||||||| ||| |||||  |||||||||||||||||||| ||    ||||||||||    
T  20200174 tcggcagttaactgcagttggttattgaatttcttgacagttaactgccgatggggcaaaaacgtattttatttgtgtgcctcagccttatgcaatgtgt 20200273  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  20200274 caacaacaattctc 20200287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3603174 - 3603287
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||| |||||||||||||| |||||||||||| || | ||||||||| ||||||  |||||  |||||||| || |||||||| ||    ||||||||||    
T  3603174 tcggaagttaactgcagccagttattgaattcttcggcagttaactgtcgagggagcaaaaacgtattttacttatgtgcctcagccttatgcaatgtgt 3603273  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  3603274 caacaacaattctc 3603287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 33995174 - 33995256
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||| |||| ||| || ||||||| ||| | ||||||||| |||||||| |||||||||||||| |||||||||||    
T  33995174 tcggcagttaattgcatccgatttttgaatttctcggcagttaactgtcgaggggataaaattgtattttacttgtgtgcctc 33995256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 41201775 - 41201693
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||||||||||||||||||||||   | |||| || |||| ||||||||| |||||||| | |||||||||    
T  41201775 tcggcagttaactgcagccggttattgaattcctcgacaattaattgtcgagaggacaaaatcgtattttactcgtgtgcctc 41201693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 25499913 - 25499990
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgt 78  Q
    |||||||||||| ||| |||||| |||||||||||   ||||||||||||||||| |||||  |||||||| ||||||    
T  25499913 tcggcagttaaccgcaaccggtttttgaattcctcgatagttaactgccgagggggcaaaagcgtattttacttgtgt 25499990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24053227 - 24053144
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcg 84  Q
    ||||||||||||||||| ||||| ||||||| ||| | | |||||||||||| | ||||||  ||||||||||| |||| ||||    
T  24053227 tcggcagttaactgcagacggtttttgaattactcggcatttaactgccgagagaacaaaaacgtattttatttatgtgtctcg 24053144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34122571 - 34122501
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |  |||||||| | ||||||||||||| ||| |||||| ||||||||    
T  34122571 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaaggggcaaaatcgtatttta 34122501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34682304 - 34682189
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||| |||||||||||   ||||||||| | ||||  |||||  |||||||| |||||  |||| ||    || |||||||    
T  34682304 tcggcagttaactgcagccggtttttgaattcctcgacagttaactgtcaagggagcaaaagcgtattttacttgtgaacctcagccttatgaaatgtgt 34682205  T
Q  97 caacaacaattctcca 112  Q
    ||||||||||| ||||    
T  34682204 caacaacaattttcca 34682189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1397376 - 1397441
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgta 66  Q
    ||||||||||||||||||||| | |  |||||||| | ||||||||||||||||| ||||| ||||    
T  1397376 tcggcagttaactgcagccggatttctaattcctcagcagttaactgccgagggggcaaaaatgta 1397441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 1398645 - 1398581
Alignment:
Q  7 gttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||| |||||||||||||||||| | ||||||||| ||| ||  ||||| |||||||||    
T  1398645 gttaactgcaaccggttattgaattcctcggcagttaactgtcgaaggagcaaaagtgtatttta 1398581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19228672 - 19228726
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggg 55  Q
    |||||||||||||||| |||||| || ||||| || | |||||||||||||||||    
T  19228672 tcggcagttaactgcatccggttttttaattcatcggcagttaactgccgagggg 19228726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41798865 - 41798795
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |  ||||| || | ||||||||||||||||| ||||||  |||||||    
T  41798865 tcggcagttaactgcagccggatttcaaattcttcagcagttaactgccgagggggcaaaatcatatttta 41798795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 33993326 - 33993257
Alignment:
Q  2 cggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||| ||||||||| |||||||  || | |||||||| |||||||| |||||  ||||||||    
T  33993326 cggcagttaactacagccggtttttgaatttttcggcagttaacttccgagggggcaaaaacgtatttta 33993257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 34123963 - 34124031
Alignment:
Q  3 ggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||| | |  |||| |||   ||||||||||||||||| |||||| ||||||||    
T  34123963 ggcagttaactgcagccggatttcaaatttctcgacagttaactgccgagggggcaaaatcgtatttta 34124031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 7247890 - 7247999
Alignment:
Q  5 cagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaac 100  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||  |||||||||| ||||||||| ||    | ||||||||||||    
T  7247890 cagttaactgcagccggttattgaattcctcggcagttaactgccgagggggcaaaagcgtattttattcgtgtgcctcagccttatccaatgtgtcaac 7247989  T
Q  101 aacaattctc 110  Q
    ||||||||||    
T  7247990 aacaattctc 7247999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41579750 - 41579863
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||||||||||||||| | | |||||||||||||||  ||||| |||||||| || |||||||| ||    ||||| ||||    
T  41579750 tcggcagttaactgcagccggttattgaattcctcagcaattaactgccgagggggaaaaatcgtattttacttatgtgcctcagccttatgcaacgtgt 41579849  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  41579850 caacaacaattctc 41579863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 28611126 - 28611204
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 79  Q
    ||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||| ||||||| ||||||| |||||||    
T  28611126 tcggcagttaactgcagccggtttttgaatttctcggcagttaactgccgagggggcaaaattatattttacttgtgtg 28611204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 2432973 - 2433082
Alignment:
Q  5 cagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaac 100  Q
    |||||||||| | ||||||||||||||||||   |||||||||||||||||| ||||  |||||||| | ||||||||| ||    ||||||||||||||    
T  2432973 cagttaactgtatccggttattgaattcctcgacagttaactgccgaggggataaaagcgtattttactcgtgtgcctcagccttatgcaatgtgtcaac 2433072  T
Q  101 aacaattctc 110  Q
    ||||||||||    
T  2433073 aacaattctc 2433082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 45101874 - 45101956
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||||||||||||||| |||||||||||   | |||||||||||||||| ||||  |||||||| || ||||||||    
T  45101874 tcggcagttaactgcagccggtttttgaattcctcaacaattaactgccgaggggataaaaacgtattttacttatgtgcctc 45101956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 46344984 - 46344902
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||||||| || |||||||||||   ||||||||||||||||| |||||   ||||||| |||||||||||    
T  46344984 tcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgagggggcaaaaaaatattttacttgtgtgcctc 46344902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 19440303 - 19440221
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||||||||||  ||||||| || | ||||||||||||||| | ||||| | ||||||| | |||||||||    
T  19440303 tcggcagttaactgcagccggtttatgaattcttcggcagttaactgccgaggaggcaaaagtttattttactcgtgtgcctc 19440221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 19454351 - 19454466
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||||| ||| || ||||||||||| | |||||||||||||| || |||||  |||||||| | ||||| |||  |    |||||||| |    
T  19454351 tcggcagttaactgcaaccgatttttgaattcctcagcagttaactgccgagagggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtat 19454450  T
Q  97 caacaacaattctcca 112  Q
    ||||||||||||||||    
T  19454451 caacaacaattctcca 19454466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29918367 - 29918449
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||||||||||||||| | |||||  || | |||||| |||||||||| |||||| |||||||| || ||||||||    
T  29918367 tcggcagttaactgcagccggttttcgaattattcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctc 29918449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 29929473 - 29929391
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||| ||||||||||| |||||||||||   ||||||||| ||||||  ||||||  ||||||| |||||||||||    
T  29929473 tcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgagggagcaaaatcatattttacttgtgtgcctc 29929391  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29967520 - 29967602
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||||||||||||||| | |||||  || | |||||| |||||||||| |||||| |||||||| || ||||||||    
T  29967520 tcggcagttaactgcagccggttttcgaattattcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctc 29967602  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 29978627 - 29978545
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||| ||||||||||| |||||||||||   ||||||||| ||||||  ||||||  ||||||| |||||||||||    
T  29978627 tcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgagggagcaaaatcatattttacttgtgtgcctc 29978545  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 30256029 - 30256139
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||| || |||||||| | |||||||| || ||||| ||    ||||||||| ||||||||||| ||    || |||||||    
T  30256029 tcggcagttaactgcagccggttttttaattcctcggcagttaactaccaagggggcatttatgtattttacttgtgtgcctcagctttatgaaatgtgt 30256128  T
Q  97 caacaacaatt 107  Q
    |||||||||||    
T  30256129 caacaacaatt 30256139  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 52570592 - 52570701
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||| |||||||||||| ||||| |||||||| || | |||||||||||||||||| ||||  |||||||| | ||||||||| ||    ||||||||||    
T  52570592 tcggtagttaactgcagtcggtttttgaattcttcggcagttaactgccgagggga-aaaaacgtattttaatcgtgtgcctcagccttatgcaatgtgt 52570690  T
Q  97 caacaacaatt 107  Q
    |||| ||||||    
T  52570691 caacgacaatt 52570701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 43571713 - 43571788
Alignment:
Q  3 ggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgt 78  Q
    ||||||||||||||||||  | ||||||||||| | ||||||||||||||||| |||||   ||||||| ||||||    
T  43571713 ggcagttaactgcagccgacttttgaattcctcagcagttaactgccgagggggcaaaaacatattttacttgtgt 43571788  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 66947 - 66878
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||| |||||||||||||||||| |||||| |||| | ||||||||||||||||| |||||  ||||||||    
T  66947 tcggtagttaactgcagccggtt-ttgaatacctcggcagttaactgccgagggggcaaaagcgtatttta 66878  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 34691668 - 34691602
Alignment:
Q  5 cagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||| | || | |||||| | ||||||||||||||| | |||||||||||||||    
T  34691668 cagttaactgcagccggatttttatttcctcggcagttaactgccgaggaggcaaaattgtatttta 34691602  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41803045 - 41802975
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||||| || ||||| || | |||||||||||||| || |||||  ||||||||    
T  41803045 tcggcagttaactgcagccggtttttaaattcttcggcagttaactgccgagtgggcaaaaacgtatttta 41802975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 49219817 - 49219887
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||| |||||| | |||||||||||||||    
T  49219817 tcggcagttaactgcagccggatttctaattcctcggcagttaactaccgaggaggcaaaattgtatttta 49219887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7839525 - 7839585
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||| |||||||||||||||||| |||||||||||   |||| |||||||||||| |||||    
T  7839525 tcggtagttaactgcagccggtttttgaattcctcgacagtttactgccgagggggcaaaa 7839585  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19341620 - 19341680
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||| |||||||||||||||| | |  |||||||| | |||||||||||||||||||||||    
T  19341620 tcggtagttaactgcagccggatttctaattcctcggcagttaactgccgaggggacaaaa 19341680  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 52567810 - 52567697
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||| |||||||| || |||||||  || | ||||||||||||||  | |||||| |||||||| | ||||||||| ||    ||||| || |    
T  52567810 tcggcagttaagtgcagccgatttttgaattattcggcagttaactgccgagaaggcaaaatcgtattttactcgtgtgcctcagccttatgcaacgtat 52567711  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  52567710 caacaacaattctc 52567697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 55207691 - 55207759
Alignment:
Q  3 ggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||| |||||| |||||||| || | ||||||||||||| ||| |||||  ||||||||    
T  55207691 ggcagttaactgcaaccggtttttgaattcttcggcagttaactgccgatggggcaaaagagtatttta 55207759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2743445 - 2743390
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggga 56  Q
    ||||||||||||||||||||| | |  |||||||| | ||||||||||||||||||    
T  2743445 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggga 2743390  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4002531 - 4002585
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggg 55  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||||||||||||    
T  4002531 tcggcagttaactgcagccggatttcaaattcctcagtagttaactgccgagggg 4002585  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7841168 - 7841098
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||| ||||||| | | |  |||||||| | |||||| |||||||||| |||||||||||||||    
T  7841168 tcggcagttaaatgcagccagatttcaaattcctcggtagttaattgccgagggggcaaaattgtatttta 7841098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13743340 - 13743286
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggg 55  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||||||||||||    
T  13743340 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggg 13743286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23443132 - 23443202
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||||||   |  |||||||| | |||||||||||||||||  ||||| ||||||||    
T  23443132 tcggcagttaactgcagccggaattcaaattcctcggcagttaactgccgagggggtaaaatcgtatttta 23443202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 42804502 - 42804420
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||| |  ||| || |||||||| | ||||||||  ||||||| | ||| ||||||||| |||||||||||    
T  42804502 tcggcagttaactgcaactagttttttaattcctcggcagttaactatcgagggggctaaagtgtattttacttgtgtgcctc 42804420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45098878 - 45098825
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggg 55  Q
    |||||| ||||||||||||| || ||||||||||| | |||||||||||||||||    
T  45098878 tcggcaattaactgcagccgttt-ttgaattcctcggcagttaactgccgagggg 45098825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 20366236 - 20366191
Alignment:
Q  4 gcagttaactgcagccggttattgaattcctctggagttaactgcc 49  Q
    ||||||||||||||| |||| ||||||||||| | |||||||||||    
T  20366236 gcagttaactgcagctggtttttgaattcctcggcagttaactgcc 20366191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 42807664 - 42807705
Alignment:
Q  39 agttaactgccgaggggacaaaattgtattttatttgtgtgc 80  Q
    ||||||||||||||| | ||||| ||||||||||||||||||    
T  42807664 agttaactgccgaggaggcaaaaatgtattttatttgtgtgc 42807705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6505977 - 6506037
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||||||||||||||||||||||  | |||||||  | |||||||| | ||||||||||||    
T  6505977 tcggcagttaactgcagccggtttcttaattccttggcagttaacttctgaggggacaaaa 6506037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 7843081 - 7843113
Alignment:
Q  39 agttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||| ||||||||||||||    
T  7843081 agttaactgccgaggggataaaattgtatttta 7843113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 48250895 - 48250955
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||||||||||||||||||||   |  |||||||| | ||||||||||||||||| |||||    
T  48250895 tcggcagttaactgcagccggaattcaaattcctcagcagttaactgccgagggggcaaaa 48250955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50216880 - 50216928
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgcc 49  Q
    ||||||||||||||||||||| | || |||||||| | |||||||||||    
T  50216880 tcggcagttaactgcagccggatttttaattcctcggcagttaactgcc 50216928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 55267488 - 55267428
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||||| ||||||||||||| || |||||||| || | ||||||||| ||||||| |||||    
T  55267488 tcggcaattaactgcagccgatttttgaattcttcggcagttaactgtcgagggggcaaaa 55267428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 46141829 - 46141716
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| || |||||| |||||||| |||||| |||| ||    |||||| |||    
T  46141829 tcggcagttaactgcagccggttattgaattcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtacctcagccttatgcaatatgt 46141730  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  46141729 caacaacaattctc 46141716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 46973251 - 46973141
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||| |||||| |||||||| ||||||| ||| ||    || |||||||    
T  46973251 tcggcagttaactgcagccggtttttgaattcctcggcagttaactgccaagggggcaaaatcgtattttacttgtgtgtctcagcctaatgaaatgtgt 46973152  T
Q  97 caacaacaatt 107  Q
    |||||||||||    
T  46973151 caacaacaatt 46973141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 13173882 - 13173773
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||| ||||||||||||||||| ||||||||| | | ||||||||||||||||| |||||| |||||||| ||||||||||| ||    || |||||||    
T  13173882 tcggctgttaactgcagccggtttttgaattcc-cagcagttaactgccgagggggcaaaatagtattttacttgtgtgcctcagccttatgaaatgtgt 13173784  T
Q  97 caacaacaatt 107  Q
    |||||||||||    
T  13173783 caacaacaatt 13173773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4516078 - 4515991
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaac-----tgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||     ||||||||||||||||| |||||||| |||||||||||    
T  4516078 tcggcagttaactgcagccggtttttgaattcctcggcagttaactgccctgccgaggggacaaaatcgtattttacttgtgtgcctc 4515991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 6437570 - 6437678
Alignment:
Q  6 agttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaaca 101  Q
    |||||||||||| || ||||||| |||||| | |||||||||||||| || |||||  |||||||| ||||||||||| ||    |||||||||||||||    
T  6437570 agttaactgcagtcgattattgacttcctcggcagttaactgccgagagggcaaaagcgtattttacttgtgtgcctcagctttatgcaatgtgtcaaca 6437669  T
Q  102 acaattctc 110  Q
    |||||||||    
T  6437670 acaattctc 6437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36908625 - 36908543
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||||||||||||||| |||||||| ||   ||||||||||||||| | ||||| ||||||||| |||||||||||    
T  36908625 tcggcagttaactgcagccggtttttgaattcttcgacagttaactgccgaggaggcaaaaatgtattttacttgtgtgcctc 36908543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 41804059 - 41804141
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||||||||| ||||| ||||||||||| | ||||||||||||| ||| |||||  |||||||| |||||||||||    
T  41804059 tcggcagttaactgcagtcggtttttgaattcctcggcagttaactgccgaaggggcaaaagcgtattttacttgtgtgcctc 41804141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 25040140 - 25040188
Alignment:
Q  39 agttaactgccgaggggacaaaattgtattttatttgtgtgcctcggct 87  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  25040140 agttaactgccgaagggacaaaattgtattttacttgtgtgcctcggct 25040188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 49927539 - 49927652
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||  |||||||| || ||||| || | |||||||||||||||||||||||  |||||||| | ||||  ||||||    || |||||||    
T  49927539 tcggcagttaactatagccggtttttaaattcttcggcagttaactgccgaggggacaaaaacgtattttactcgtgtttctcggccatatgaaatgtgt 49927638  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  49927639 caacaacaattctc 49927652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 35521654 - 35521579
Alignment:
Q  8 ttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||| || | |||||| | |||||||||||||| || |||||| |||||||| |||||||||||    
T  35521654 ttaactgcagccggttttttatttcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtgcctc 35521579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 18975149 - 18975259
Alignment:
Q  4 gcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaa 99  Q
    ||||||||||||| || |||||| ||||||||   ||||||| ||||||||| |||||  |||||||| |||||| |||| ||    | |||||||||||    
T  18975149 gcagttaactgcaaccagttattaaattcctcgacagttaaccgccgagggggcaaaaacgtattttacttgtgtacctcagctttatacaatgtgtcaa 18975248  T
Q  100 caacaattctc 110  Q
    |||||||||||    
T  18975249 caacaattctc 18975259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 19054101 - 19054036
Alignment:
Q  6 agttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||| ||||||||||| | ||||||||| ||||||| |||||  ||||||||    
T  19054101 agttaactgcagccggtttttgaattcctcggcagttaactgtcgagggggcaaaaacgtatttta 19054036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6562187 - 6562257
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||||||||||||  ||||| ||||||||    
T  6562187 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtatttta 6562257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23276134 - 23276204
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||| |||||| | || |||||||| | ||||||||||||||||| |||||  ||||||||    
T  23276134 tcggcagttaactgtagccggatttttaattcctcagcagttaactgccgagggggcaaaaacgtatttta 23276204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27485106 - 27485036
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | || |||||||  | ||||||||||||||||| |||||  ||||||||    
T  27485106 tcggcagttaactgcagccggatttttaattcctaggcagttaactgccgagggggcaaaaacgtatttta 27485036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30905818 - 30905748
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |  |||| ||| | |||||||||||||||||| ||||| ||||||||    
T  30905818 tcggcagttaactgcagccggatttcaaatttctcggcagttaactgccgaggggataaaatcgtatttta 30905748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 23272895 - 23272826
Alignment:
Q  2 cggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||| || |||| |||||||| | ||||||||| |||||||| ||||  ||||||||    
T  23272895 cggcagttaactgcagctggatatttaattcctcggcagttaactggcgaggggaaaaaaacgtatttta 23272826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26633574 - 26633495
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||| |||||| |||||||| || | ||||||   |||||||| |||||  |||||||| |||||||||||    
T  26633574 tcggcagttaactgcaaccggtttttgaattcttcggtagttaa---ccgagggggcaaaagcgtattttacttgtgtgcctc 26633495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36076584 - 36076618
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  36076584 tcggcagttaactgcagccggtttttgaattcctc 36076618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 44470037 - 44470091
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggg 55  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||||||||||||    
T  44470037 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggg 44470091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 51289986 - 51290040
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggg 55  Q
    |||||||||||||||| |||| | || |||||||| | |||||||||||||||||    
T  51289986 tcggcagttaactgcaaccggatttttaattcctcagtagttaactgccgagggg 51290040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15047329 - 15047276
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggg 54  Q
    ||||||||||||||||||||| | |  |||||||| | ||||||||||||||||    
T  15047329 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaggg 15047276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 19495113 - 19495037
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgt 78  Q
    ||||||||||||||||||||| | ||||||| ||    ||||||||| ||||||| ||||| ||||||||| ||||||    
T  19495113 tcggcagttaactgcagccggattttgaatttcttgatagttaactgtcgagggg-caaaagtgtattttacttgtgt 19495037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27115849 - 27115898
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccg 50  Q
    ||||||||||||||||||||||| || |||||||| | | ||||||||||    
T  27115849 tcggcagttaactgcagccggtttttaaattcctcggcaattaactgccg 27115898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 51288931 - 51288874
Alignment:
Q  4 gcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||||||||||||||||| | |  |||||||| | ||||||||||||||||| |||||    
T  51288931 gcagttaactgcagccggatttctaattcctcggtagttaactgccgagggggcaaaa 51288874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29438046 - 29438106
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||| |||||||||||||||||| || |||   |||| ||||||||||||||||| |||||    
T  29438046 tcggtagttaactgcagccggttttttaatatttctgcagttaactgccgagggggcaaaa 29438106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 51337543 - 51337587
Alignment:
Q  5 cagttaactgcagccggttattgaattcctctggagttaactgcc 49  Q
    ||||||||||||||||||| || |||||||| | |||||||||||    
T  51337543 cagttaactgcagccggttttttaattcctcggcagttaactgcc 51337587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 52802177 - 52802117
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||||||||| || |||||    
T  52802177 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagagggcaaaa 52802117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29700328 - 29700438
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||  |||||||| ||||||||||| ||    || |||||||    
T  29700328 tcggcagttaactgcagccggttattgaattcctcagcagttaactgtcgaggagacaaaagcgtattttacttgtgtgcctcagccttatgaaatgtgt 29700427  T
Q  97 caacaacaatt 107  Q
    |||||||||||    
T  29700428 caacaacaatt 29700438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 4768725 - 4768615
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||| | | ||||||||||| | ||||||||||||||||| ||||||| ||||||| |||||||| || ||    || |||||||    
T  4768725 tcggcagttaactgcagccagattttgaattcctcggcagttaactgccgagggggcaaaattatattttacttgtgtgcatcagccttatgaaatgtgt 4768626  T
Q  97 caacaacaatt 107  Q
    |||||||||||    
T  4768625 caacaacaatt 4768615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 49572926 - 49573039
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||||||||| ||||||||||||||   ||||||||| ||| ||| |||||  |||||||| ||||||||||| ||    ||||||||||    
T  49572926 tcggcagttaactgcagccgattattgaattcctcgacagttaactgtcgatggggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgt 49573025  T
Q  97 caacaacaattctc 110  Q
    ||||||| ||||||    
T  49573026 caacaacgattctc 49573039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 34154431 - 34154498
Alignment:
Q  4 gcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||||| || |||||||| | ||||||||||||| ||||||||| |||||||||    
T  34154431 gcagttaactgcagccggttttttaattcctcggcagttaactgccgatgggacaaaaatgtatttta 34154498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 37959746 - 37959856
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||||||| ||||||| ||||||||   |||||||||||||||||  ||||  |||||||| | ||||||||| ||    || |||||||    
T  37959746 tcggcagttaactgcagctggttattaaattcctcaacagttaactgccgagggggtaaaaacgtattttactcgtgtgcctcagccttatgtaatgtgt 37959845  T
Q  97 caacaacaatt 107  Q
    |||||||||||    
T  37959846 caacaacaatt 37959856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 955839 - 955757
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||||||| || ||||||||||| | ||||||||||| | | | |||||  |||||||| |||||||||||    
T  955839 tcggcagttaactgcagccgatttttgaattcctcagcagttaactgccaaagaggcaaaaacgtattttacttgtgtgcctc 955757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11494590 - 11494521
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||||| |||||||||||   |||||| ||||||||||||||||  ||||||||    
T  11494590 tcggcagttaactgcagccggtt-ttgaattcctcgacagttaattgccgaggggacaaaaacgtatttta 11494521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21472510 - 21472580
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||||| || ||||||||||| | ||||||||||||||| | |||||  ||||||||    
T  21472510 tcggcagttaactgcagccgatttttgaattcctcggcagttaactgccgaggcggcaaaaacgtatttta 21472580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 958620 - 958701
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||| |||||| |||||||| || | ||||||||| |||| ||||||||  |||||||| || ||||||||    
T  958620 tcggcagttaactgcaaccggtttttgaattcatc-gcagttaactgtcgagaggacaaaaacgtattttacttatgtgcctc 958701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9890041 - 9889971
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||||||||||||  ||||| ||||||||    
T  9890041 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtatttta 9889971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 18578696 - 18578618
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 79  Q
    ||||||| |||||||||||| || |||||||||||   ||||||||||| ||| | ||||| ||||||||| |||||||    
T  18578696 tcggcagataactgcagccgttttttgaattcctcgacagttaactgccaaggaggcaaaaatgtattttacttgtgtg 18578618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 51426584 - 51426503
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcct 82  Q
    |||||| ||||||||||||| || |||||||||||   ||||||||| |||  ||||||||  |||||||| ||||||||||    
T  51426584 tcggcaattaactgcagccgatttttgaattcctcgacagttaactgtcgaaaggacaaaaacgtattttacttgtgtgcct 51426503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 50274807 - 50274747
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    ||||||||||||||||||||| | |  |||||||| | ||||||||||||||||| |||||    
T  50274807 tcggcagttaactgcagccggatttctaattcctcggcagttaactgccgagggggcaaaa 50274747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 21470944 - 21470868
Alignment:
Q  7 gttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||| | ||| |||||| ||||   ||||||||||||||  |||||||  |||||||| |||||||||||    
T  21470944 gttaactgcagtcagtttttgaatacctcgacagttaactgccgagaagacaaaaacgtattttacttgtgtgcctc 21470868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 18438681 - 18438568
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||| ||| |||||  |||||||| |||||||| || ||    ||||||||||    
T  18438681 tcggcagttaactgcagccggttattgaattcctcaacagttaactgccgaaggggcaaaagcgtattttacttgtgtgcatcagccttatgcaatgtgt 18438582  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  18438581 caacaacaattctc 18438568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 7168135 - 7168025
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||| |||||||| || | || |||| | ||||||| |||||| |||||||| ||||||||||| ||    || |||||||    
T  7168135 tcggcagttaactgcagccggtttttgaattcttcggcagctaacagtcgagggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatgtgt 7168036  T
Q  97 caacaacaatt 107  Q
    |||||||||||    
T  7168035 caacaacaatt 7168025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18441467 - 18441580
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||| ||  ||||||||||||| ||| | ||||||||||||||||| |||||  |||||||| ||||||| ||| ||    || |||||||    
T  18441467 tcggcagttaactacaatcggttattgaatttctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgaaatgtgt 18441566  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  18441567 caacaacaattctc 18441580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 38872956 - 38873035
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgc 80  Q
    ||||||||||||||||||||||| || |||||||| | ||||||||| ||||||||||||| | | ||||| ||||||||    
T  38872956 tcggcagttaactgcagccggtttttaaattcctcggtagttaactgacgaggggacaaaaatattttttacttgtgtgc 38873035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41858147 - 41858260
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||| |||||||| ||   ||||||||||||||||| |||||  |||||||| | ||||  ||| ||    || |||||||    
T  41858147 tcggcagttaactgcagccggtttttgaattcttcgccagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccatatgaaatgtgt 41858246  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  41858247 caacaacaattctc 41858260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 22577708 - 22577634
Alignment:
Q  5 cagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 79  Q
    |||||||||||| ||  || ||||||||||| | | |||||||||||||| ||||||  ||||||||||||||||    
T  22577708 cagttaactgcaaccaatttttgaattcctcagcaattaactgccgagggaacaaaaacgtattttatttgtgtg 22577634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 42602507 - 42602437
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||| |||||| |||||||| || | |||||||||||||  | |||||| |||||||||    
T  42602507 tcggcagttaactgcatccggtttttgaattcttcggcagttaactgccgatagaacaaaaatgtatttta 42602437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 45454453 - 45454373
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcc 81  Q
    |||||||||||||||| |||| | |  |||||||| | ||||||||||||||| | |||||| |||||||| | |||||||    
T  45454453 tcggcagttaactgcatccggatttcaaattcctcggcagttaactgccgaggaggcaaaatcgtattttactagtgtgcc 45454373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21406314 - 21406259
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggga 56  Q
    |||| ||||||||||||||||||  |||||||||| | |||||||||| |||||||    
T  21406314 tcggtagttaactgcagccggtttatgaattcctcggcagttaactgcagagggga 21406259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21800806 - 21800751
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggga 56  Q
    |||| ||||||||||||||||||  |||||||||| | |||||||||| |||||||    
T  21800806 tcggtagttaactgcagccggtttatgaattcctcggcagttaactgcagagggga 21800751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 35940486 - 35940407
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgc 80  Q
    |||||||||||||||||| | |||||||||||||| | | ||| ||| ||| | | ||||| |||||||||||| |||||    
T  35940486 tcggcagttaactgcagctgattattgaattcctcagcacttagctgtcgaagaggcaaaaatgtattttatttatgtgc 35940407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 35966802 - 35966845
Alignment:
Q  28 aattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||| | ||||||||||||||||| |||||||||||||||    
T  35966802 aattcctcggcagttaactgccgagggggcaaaattgtatttta 35966845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1114790 - 1114720
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |  |||| ||| | |||||||||||||||||  ||||| ||||||||    
T  1114790 tcggcagttaactgcagccggatttcaaatttctcggcagttaactgccgagggggtaaaatcgtatttta 1114720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 18205831 - 18205781
Alignment:
Q  3 ggcagttaactgcagccggttattgaattcctctggagttaactgccgagg 53  Q
    ||||||||||||||||||||| |||||||| || | ||||||| |||||||    
T  18205831 ggcagttaactgcagccggtttttgaattcttcggcagttaaccgccgagg 18205781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41855415 - 41855345
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||||| || |||||||| ||   ||||||||||||||| | |||||  ||||||||    
T  41855415 tcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgaggaggcaaaaacgtatttta 41855345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42605260 - 42605314
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggg 55  Q
    |||||||||||||||||||| || |||||||| ||   |||||||||||||||||    
T  42605260 tcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgagggg 42605314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 48314720 - 48314608
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||| |||||| ||||  |    ||||||||||    
T  48314720 tcggtagttaactgcagccggttattgaattcctcggcagttaactgccgagggg-caaaaatgtattttacttgtgtacctcaaccttatgcaatgtgt 48314622  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  48314621 caacaacaattctc 48314608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21185666 - 21185553
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||| |||||||||||||||||| || | ||||||||||||||| | |||||| |||||||| || |||| |||  |    ||||||||||    
T  21185666 tcggcagttaactacagccggttattgaattcttcggcagttaactgccgaggaggcaaaatcgtattttacttatgtgtctcatcattatgcaatgtgt 21185567  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  21185566 caacaacaattctc 21185553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 9494832 - 9494942
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    ||||||||||||||||||||||| || |||||||| | ||||||||||||||||| || |    ||||||| ||||||||||| ||    || |||||||    
T  9494832 tcggcagttaactgcagccggttttttaattcctcggcagttaactgccgagggggcatatacctattttacttgtgtgcctcagccttatgaaatgtgt 9494931  T
Q  97 caacaacaatt 107  Q
    |||||||||||    
T  9494932 caacaacaatt 9494942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 46863373 - 46863483
Alignment:
Q  4 gcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaa 99  Q
    |||||||||||||||||||| || |||| ||| | ||||||||||||| ||| |||||  |||||||| ||||||| ||| ||    ||||||| |||||    
T  46863373 gcagttaactgcagccggtttttcaatttctcggcagttaactgccgatggggcaaaaacgtattttacttgtgtgtctcagccttatgcaatgcgtcaa 46863472  T
Q  100 caacaattctc 110  Q
    |||||||||||    
T  46863473 caacaattctc 46863483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28980199 - 28980312
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||||| |||| |||||||||| || | || ||||||| |||||| |||||  |||||||| | ||||| ||| ||    ||||||||||    
T  28980199 tcggcagttaactgcatccggatattgaattcttcggcagctaactgctgagggggcaaaaacgtattttactcgtgtgtctcagccttatgcaatgtgt 28980298  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  28980299 caacaacaattctc 28980312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27453620 - 27453690
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | || |||||||| | ||||||||||||||||| |||| | ||||||||    
T  27453620 tcggcagttaactgcagccggatttttaattcctcggcagttaactgccgagggggcaaagtcgtatttta 27453690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10705295 - 10705214
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcct 82  Q
    |||||||||||||||||||| || || |||| ||| | ||||||||||| |||||  |||| ||||||||| ||||||||||    
T  10705295 tcggcagttaactgcagccgattttttaatttctcggcagttaactgccaaggggggaaaaatgtattttacttgtgtgcct 10705214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37340349 - 37340268
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcct 82  Q
    |||||||||||||||| |||||| |||||||||||   ||||||||| ||| | |||||||  ||||||||||| |||||||    
T  37340349 tcggcagttaactgcaaccggtttttgaattcctcgacagttaactgtcgaagagacaaaaacgtattttatttatgtgcct 37340268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 46860553 - 46860476
Alignment:
Q  6 agttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||| ||||| || ||||||||   ||||||||||||||||| |||||  |||||||| |||||||||||    
T  46860553 agttaactgcagtcggtttttcaattcctcgacagttaactgccgagggggcaaaagcgtattttacttgtgtgcctc 46860476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 34622542 - 34622433
Alignment:
Q  5 cagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaac 100  Q
    ||||||||||||| |||||  | |||||||||| ||||||||| | ||||| |||||  |||  ||| ||||||||||| ||    ||||||||||||||    
T  34622542 cagttaactgcagtcggtttcttaattcctctgcagttaactgtcaagggggcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcaac 34622443  T
Q  101 aacaattctc 110  Q
    ||||||||||    
T  34622442 aacaattctc 34622433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 36392172 - 36392059
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||| ||| ||| || |||||||||||   ||||||||| ||||||| |||||  |||||||| ||||||||||  ||    || |||||||    
T  36392172 tcggcagttaaccgcaaccgatttttgaattcctcaacagttaactgtcgagggggcaaaaacgtattttacttgtgtgcctaagccttatgtaatgtgt 36392073  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  36392072 caacaacaattctc 36392059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21188426 - 21188472
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactg 47  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||||    
T  21188426 tcggcagttaactgcagccggtttttgaattcctcggcagttaactg 21188472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30355265 - 30355335
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||||| || |||||||| || | | ||||||||||||||| |||||  ||||||||    
T  30355265 tcggcagttaactgcagccgatttttgaattcttcagcaattaactgccgagggggcaaaagcgtatttta 30355335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 36186499 - 36186613
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||||| |||||| | ||||||||| | | ||||||||||||||| |||||  |||||||| | ||||| | | ||    ||||||||||    
T  36186499 tcggcagttaactgcaaccggtt-tcgaattcctcggcatttaactgccgagggggcaaaagcgtattttactcgtgtgacacagccttatgcaatgtgt 36186597  T
Q  97 caacaacaattctcca 112  Q
    ||||||||||| ||||    
T  36186598 caacaacaattttcca 36186613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 47060973 - 47060892
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    ||||||||||||| |||||| || |||||||||||   ||||||||||||||||| |||||  |||||||| |||| ||||||    
T  47060973 tcggcagttaactacagccgatt-ttgaattcctcgacagttaactgccgagggggcaaaaacgtattttacttgtatgcctc 47060892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41047824 - 41047712
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcc----tcggctgcaatgtgt 96  Q
    ||||||||||||| || ||| ||||| ||||| |||| |||||||| |||||  | ||||| |||||||||||| ||||||    ||   ||||||||||    
T  41047824 tcggcagttaactacacccgattattaaattcttctgcagttaactaccgagaag-caaaaatgtattttatttatgtgccgcagtcttatgcaatgtgt 41047726  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  41047725 caacaacaattctc 41047712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 618751 - 618806
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgagggga 56  Q
    ||||||||||||||||||||| | |  |||||||| | ||||||||||||||||||    
T  618751 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggga 618806  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29593354 - 29593424
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||||||||||||||||||   |  |||||||| | ||||||||| |||||||  ||||||||||||||    
T  29593354 tcggcagttaactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaattgtatttta 29593424  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 42682041 - 42681959
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||||| |||| ||||||| |||    ||||||| |||||| ||||||| || |||||| || ||||||||    
T  42682041 tcggcagttaactgcagctggtttttgaatttctcaaccgttaactaccgaggagacaaaaatgcattttacttatgtgcctc 42681959  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47776379 - 47776309
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||| | | || |||| ||| | ||||||||| ||||||| |||||| ||||||||    
T  47776379 tcggcagttaactgcagccagatttttaatttctcggcagttaactgtcgagggggcaaaatcgtatttta 47776309  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 36185842 - 36185801
Alignment:
Q  42 taactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||| |||||| |||||||| |||||||||||    
T  36185842 taactgccgagggggcaaaatcgtattttacttgtgtgcctc 36185801  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 45361696 - 45361643
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggg 54  Q
    ||||||||||||||||||||| | || ||||||||   ||||||||||||||||    
T  45361696 tcggcagttaactgcagccggatttttaattcctcgtcagttaactgccgaggg 45361643  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 13404659 - 13404770
Alignment:
Q  2 cggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtc 97  Q
    ||||||||||||||||| ||||||||||||||||   |||||||| |||||||| ||||   |||||||| ||||||||||||||    ||||||||||     
T  13404659 cggcagttaactgcagcaggttattgaattcctcgacagttaactaccgagggggcaaacgcgtattttacttgtgtgcctcggccttatgcaatgtgtt 13404758  T
Q  98 aacaacaattct 109  Q
    ||||||||||||    
T  13404759 aacaacaattct 13404770  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 12783991 - 12784065
Alignment:
Q  9 taactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||||||||||| || | ||||||||||||| ||| |||||  |||||||| |||||||||||    
T  12783991 taactgcagccggttattgaattcatcggcagttaactgccgatggggcaaaagcgtattttacttgtgtgcctc 12784065  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 35021289 - 35021359
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||||| |||||||| || | | ||||||||||||||| ||||| |||||||||    
T  35021289 tcggcagttaactgcagccggtttttgaattcttccgcatttaactgccgagggggcaaaagtgtatttta 35021359  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 13479770 - 13479663
Alignment:
Q  4 gcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaa 99  Q
    ||||||||||||||| |||| ||||||||| |   |||||||| |||||||| |||||  |||||||| ||||||||||| ||    || ||||||||||    
T  13479770 gcagttaactgcagctggtttttgaattccccgacagttaactaccgagggggcaaaagcgtattttacttgtgtgcctcagccttatgaaatgtgtcaa 13479671  T
Q  100 caacaatt 107  Q
    ||||||||    
T  13479670 caacaatt 13479663  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 23958937 - 23958867
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    |||||| |||||||||||||||| | ||||| ||| | |||||||||||||||||||||||  ||||||||    
T  23958937 tcggcatttaactgcagccggttttggaatttctcggcagttaactgccgaggggacaaaaacgtatttta 23958867  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 23986009 - 23986085
Alignment:
Q  3 ggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 79  Q
    |||||||||||||| |||||| ||||||| ||| | ||||||||||| ||||| |||||  |||||||| |||||||    
T  23986009 ggcagttaactgcaaccggtttttgaatttctcggcagttaactgccaagggggcaaaaacgtattttacttgtgtg 23986085  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25141105 - 25141218
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgt 96  Q
    |||||||||||||| ||| |||  |||||||||||   |||||||||||||  |||||||| | ||  ||||| ||||||||| ||    ||||||||||    
T  25141105 tcggcagttaactgtagctggtatttgaattcctcgacagttaactgccgaatggacaaaaatataaattattcgtgtgcctcagccttatgcaatgtgt 25141204  T
Q  97 caacaacaattctc 110  Q
    ||||||||||||||    
T  25141205 caacaacaattctc 25141218  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 13401530 - 13401473
Alignment:
Q  4 gcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    ||||||||||||||||| || || |||||||| | ||||||||||||||||| |||||    
T  13401530 gcagttaactgcagccgattttttaattcctcggcagttaactgccgagggggcaaaa 13401473  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7361238 - 7361178
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    ||||||||||||||||||||||| || || ||||| | |||||| |||||| |||||||||    
T  7361238 tcggcagttaactgcagccggtttttaaaatcctcagcagttaattgccgacgggacaaaa 7361178  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 31768800 - 31768740
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||||| |||||||||||||| | || |||||||| | ||||||||||||||||| |||||    
T  31768800 tcggcaattaactgcagccggatttttaattcctcggcagttaactgccgagggggcaaaa 31768740  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7537245 - 7537185
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    |||| |||||||||||||||||| || ||||||||   | ||||||||||||||| |||||    
T  7537245 tcggtagttaactgcagccggttttttaattcctcgacaattaactgccgagggggcaaaa 7537185  T

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Target: scaffold0618 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3932 - 3851
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 83  Q
    |||||||||||||||||||| || |||||||||||   |||||||||||||||||||||||   ||||||| |||||||||||    
T  3932 tcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgaggggacaaaa-aatattttacttgtgtgcctc 3851  T

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Target: scaffold0388 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 11739 - 11813
Alignment:
Q  4 gcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgt 78  Q
    |||||||||||||||||||| |||||||| || | ||||||||||||| ||| ||||| ||||||||| ||||||    
T  11739 gcagttaactgcagccggtttttgaattcttcagcagttaactgccgaaggggcaaaagtgtattttacttgtgt 11813  T

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Target: scaffold0341 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17377 - 17447
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||||||| | |  |||||||| | |||||||||||||||||  ||||| ||||||||    
T  17377 tcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtatttta 17447  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 232595 - 232525
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaattgtatttta 71  Q
    ||||||||||||||||| ||| | || ||||||||   |||||||||||||||||| ||||| ||||||||    
T  232595 tcggcagttaactgcagtcggatttttaattcctcgacagttaactgccgaggggataaaatcgtatttta 232525  T

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Target: scaffold0340 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1207 - 1266
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    ||||||||||| ||| ||||||| |  |||||||| | |||||||||||||||||||||||    
T  1207 tcggcagttaattgctgccggtt-tcaaattcctcggcagttaactgccgaggggacaaaa 1266  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18078 - 18018
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    ||||||||||||||||||||| | |  |||||||| | ||||||||| ||||||| |||||    
T  18078 tcggcagttaactgcagccgggtttctaattcctcggcagttaactgtcgagggggcaaaa 18018  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 54766 - 54826
Alignment:
Q  1 tcggcagttaactgcagccggttattgaattcctctggagttaactgccgaggggacaaaa 61  Q
    ||||||||||||||||||||| | |  |||||||| | ||||||||| ||||||| |||||    
T  54766 tcggcagttaactgcagccgggtttctaattcctcggcagttaactgtcgagggggcaaaa 54826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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