View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_64 (Length: 251)
Name: NF3273_low_64
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 47695533 - 47695758
Alignment:
| Q |
14 |
gaagcttcattttgttatgaccattatttccatgtttaatacgtttttcatgatgactttcagcacgtgtttaaaatggaacaagaagaatatacaaagg |
113 |
Q |
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| T |
47695533 |
gaagcttcattttgttatgaccattatttccatgtttaatacgtttttcatgatgactttcagcacgtgtttaaaatggaacaagaagaatatacaaagg |
47695632 |
T |
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| Q |
114 |
aacagatcaattggagctacattgaatttgttgacaatcaagatgttttggaccttattgaaaaggttttatttctcattttgtcactttctttaagggg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47695633 |
aacagatcaattggagctacattgaatttgttgacaatcaagatgttttggaccttattgaaaaggttttatttctcattttgtcactttctttaagggg |
47695732 |
T |
|
| Q |
214 |
ctgaggattctagtagttcaatttga |
239 |
Q |
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|||||||||||||||||||||||||| |
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| T |
47695733 |
ctgaggattctagtagttcaatttga |
47695758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 39807987 - 39808084
Alignment:
| Q |
86 |
aaaatggaacaagaagaatatacaaaggaacagatcaattggagctacattgaatttgttgacaatcaagatgttttggaccttattgaaaaggtttt |
183 |
Q |
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| T |
39807987 |
aaaatggagcaagaagaatacaaaaaagaagaaattgattggagttacattgaatttgtggataatcaagatattctggatctgattgaaaaggtttt |
39808084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 195
Target Start/End: Complemental strand, 35830322 - 35830166
Alignment:
| Q |
39 |
atttccatgtttaatacgtttttcatgatgactttcagcacgtgtttaaaatggaacaagaagaatatacaaaggaacagatcaattggagctacattga |
138 |
Q |
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| T |
35830322 |
atttccatatttaatatggttttgatgacgaatttcagcatatgttcaaaatggaacaagaagaatatgcaaaggaggagatcaattggagctacattga |
35830223 |
T |
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| Q |
139 |
atttgttgacaatcaagatgttttggaccttattgaaaaggttttatttctcatttt |
195 |
Q |
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| T |
35830222 |
atttgtggacaacaaagatgttttggaccttattgaaaaggttttctttctcctttt |
35830166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 29900233 - 29900173
Alignment:
| Q |
123 |
attggagctacattgaatttgttgacaatcaagatgttttggaccttattgaaaaggtttt |
183 |
Q |
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| T |
29900233 |
attggagttacattgaatttgttgacaatcaagatattttggatctcattgaaaaggtttt |
29900173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 31009609 - 31009501
Alignment:
| Q |
74 |
cagcacgtgtttaaaatggaacaagaagaatatacaaaggaacagatcaattggagctacattgaatttgttgacaatcaagatgttttggaccttattg |
173 |
Q |
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|||||||| ||||| ||||| ||||| ||||| ||||| ||| ||| ||||||||||| | |||||||| |||||||||||||| | || || |||| |
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| T |
31009609 |
cagcacgtttttaagatggagcaagaggaatacacaaaagaagcgattgattggagctacttagaatttgtagacaatcaagatgtactagatctcattg |
31009510 |
T |
|
| Q |
174 |
aaaaggttt |
182 |
Q |
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||||||||| |
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| T |
31009509 |
aaaaggttt |
31009501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 13854682 - 13854608
Alignment:
| Q |
86 |
aaaatggaacaagaagaatatacaaaggaacagatcaattggagctacattgaatttgttgacaatcaagatgtt |
160 |
Q |
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|||||||| ||||| ||||||||||||||| |||| ||||||| || || || |||||||| |||||||||||| |
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| T |
13854682 |
aaaatggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgtt |
13854608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 31187433 - 31187325
Alignment:
| Q |
74 |
cagcacgtgtttaaaatggaacaagaagaatatacaaaggaacagatcaattggagctacattgaatttgttgacaatcaagatgttttggaccttattg |
173 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||| ||||| ||| ||| ||||||||||| | |||||||| || ||||||||||| | || || |||| |
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| T |
31187433 |
cagcacgtttttaacatggagcaagaggaatacacaaaagaagggattgattggagctacttagaatttgtagataatcaagatgtgctagatctcattg |
31187334 |
T |
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| Q |
174 |
aaaaggttt |
182 |
Q |
| |
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||||||||| |
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| T |
31187333 |
aaaaggttt |
31187325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 52153106 - 52153012
Alignment:
| Q |
86 |
aaaatggaacaagaagaatatacaaaggaacagatcaattggagctacattgaatttgttgacaatcaagatgttttggaccttattgaaaaggt |
180 |
Q |
| |
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|||||||||||||||||||| || || ||| | ||| ||||||| ||||| || ||||||||||| |||||||||||||| || ||||| ||||| |
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| T |
52153106 |
aaaatggaacaagaagaatacaccaaagaagaaatcgattggagttacatagagtttgttgacaaccaagatgttttggatctaattgagaaggt |
52153012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 48497289 - 48497398
Alignment:
| Q |
74 |
cagcacgtgtttaaaatggaacaagaagaatatacaaaggaacagatcaattggagctacattgaatttgttgacaatcaagatgttttggaccttattg |
173 |
Q |
| |
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||||| ||||| || ||||| |||||||| |||| ||| ||| | || | ||||| |||||||||||| | ||||| ||||||||||| || | |||| |
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| T |
48497289 |
cagcatgtgttcaagatggagcaagaagagtataaaaaagaagaaattgagtggagttacattgaatttatagacaaccaagatgttttagatttgattg |
48497388 |
T |
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| Q |
174 |
aaaaggtttt |
183 |
Q |
| |
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|||||||||| |
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| T |
48497389 |
aaaaggtttt |
48497398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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