View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3273_low_69 (Length: 250)
Name: NF3273_low_69
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_69 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 36155158 - 36155041
Alignment:
| Q |
133 |
aagccaacataaaatacagaatcaatcacacaaaacaacaaaaaatcactgaatccttccatcaaataaaccttatagaacaactccaccaaccaaaccc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36155158 |
aagccaacataaaatacagaatcaatcacacagaacaacaaaaaatcactgaatccttccatcaaataaaccttatagaacagctccaccaaccaaaccc |
36155059 |
T |
|
| Q |
233 |
attccaaaaacaacaaca |
250 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36155058 |
attccaaaaacaacaaca |
36155041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 36155293 - 36155197
Alignment:
| Q |
20 |
agggaccaataacatatttaacccaaaaattaattactgaccaaaaagcccctcatgtataattggattctcataatccatgaacgaaacacaaatta |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36155293 |
agggaccaatagcatatttaacccaaaaattaattaatgatcaaaa-gcccctcatgtataattgaattctcataatccatgaacgaaacacaaatta |
36155197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 36151703 - 36151655
Alignment:
| Q |
202 |
accttatagaacaactccaccaaccaaacccattccaaaaacaacaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36151703 |
accttatagaacaactccaccaaccaaacccattccaaaaacaacaaca |
36151655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 25369580 - 25369552
Alignment:
| Q |
20 |
agggaccaataacatatttaacccaaaaa |
48 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25369580 |
agggaccaataacatatttaacccaaaaa |
25369552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University