View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_7 (Length: 601)

Name: NF3273_low_7
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_7
NF3273_low_7
[»] chr6 (15 HSPs)
chr6 (15-532)||(31564316-31564843)
chr6 (311-557)||(33385424-33385670)
chr6 (311-601)||(33259660-33259959)
chr6 (110-274)||(33416366-33416536)
chr6 (485-601)||(33416229-33416345)
chr6 (24-153)||(33385707-33385837)
chr6 (492-601)||(24631975-24632084)
chr6 (451-562)||(9165306-9165418)
chr6 (334-440)||(24631864-24631970)
chr6 (448-522)||(29274300-29274376)
chr6 (39-98)||(33281320-33281376)
chr6 (27-81)||(33416538-33416592)
chr6 (39-98)||(33301947-33302003)
chr6 (342-417)||(281808-281881)
chr6 (434-509)||(2034496-2034572)
[»] chr5 (8 HSPs)
chr5 (119-273)||(30653203-30653360)
chr5 (400-522)||(11684346-11684468)
chr5 (381-446)||(30653373-30653438)
chr5 (448-529)||(32059660-32059742)
chr5 (485-529)||(10391269-10391313)
chr5 (341-392)||(11457158-11457209)
chr5 (490-529)||(29115328-29115367)
chr5 (485-521)||(19113227-19113263)
[»] scaffold0428 (2 HSPs)
scaffold0428 (311-547)||(3802-4047)
scaffold0428 (39-98)||(12876-12932)
[»] chr2 (8 HSPs)
chr2 (27-156)||(17443374-17443503)
chr2 (311-376)||(17443537-17443602)
chr2 (448-529)||(34339039-34339122)
chr2 (481-521)||(3102617-3102657)
chr2 (339-416)||(14299588-14299663)
chr2 (448-509)||(7103554-7103615)
chr2 (448-509)||(18962109-18962172)
chr2 (305-357)||(43199930-43199982)
[»] chr8 (10 HSPs)
chr8 (339-417)||(13000381-13000457)
chr8 (456-524)||(26717178-26717246)
chr8 (434-520)||(5290566-5290649)
chr8 (466-529)||(26716527-26716590)
chr8 (339-417)||(30191098-30191174)
chr8 (396-482)||(10079082-10079168)
chr8 (396-445)||(30389108-30389157)
chr8 (448-522)||(34788498-34788574)
chr8 (485-521)||(6918955-6918991)
chr8 (451-518)||(8536123-8536191)
[»] chr3 (8 HSPs)
chr3 (341-417)||(43115093-43115167)
chr3 (451-529)||(38462197-38462277)
chr3 (449-522)||(22232749-22232824)
chr3 (456-538)||(3015928-3016011)
chr3 (339-417)||(37273171-37273247)
chr3 (318-414)||(24624250-24624344)
chr3 (485-521)||(16790466-16790502)
chr3 (456-521)||(51278236-51278303)
[»] chr7 (10 HSPs)
chr7 (341-454)||(3468614-3468725)
chr7 (448-529)||(3610811-3610894)
chr7 (400-521)||(26935573-26935696)
chr7 (485-563)||(22388014-22388093)
chr7 (456-521)||(7244626-7244693)
chr7 (485-529)||(23721417-23721461)
chr7 (448-509)||(33894559-33894621)
chr7 (449-522)||(35536030-35536105)
chr7 (342-417)||(39345508-39345581)
chr7 (485-521)||(45078217-45078253)
[»] chr1 (7 HSPs)
chr1 (466-519)||(44207697-44207750)
chr1 (339-390)||(15581316-15581367)
chr1 (473-529)||(11639512-11639568)
chr1 (339-414)||(28837002-28837075)
chr1 (401-445)||(30014095-30014139)
chr1 (448-504)||(44422642-44422698)
chr1 (490-522)||(50764489-50764521)
[»] scaffold0024 (1 HSPs)
scaffold0024 (434-507)||(21335-21410)
[»] chr4 (4 HSPs)
chr4 (466-520)||(32920489-32920543)
chr4 (456-523)||(47970240-47970309)
chr4 (436-506)||(55437345-55437415)
chr4 (341-416)||(9843212-9843285)
[»] scaffold0311 (1 HSPs)
scaffold0311 (342-417)||(10577-10650)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 532
Target Start/End: Original strand, 31564316 - 31564843
Alignment:
Q  15 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564316 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 31564415  T
Q  115 gacaaaggctcgagtaatggtttcaatttcatcttatttgct----gtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564416 gacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 31564515  T
Q  211 gaatttatacatgtatttcaatttttacatgt------aaaagagaaaaaatgaattatacttccattttgcccatcttctcatattgttttgcctcttg 304  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31564516 gaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaaattaattatacttccattttgcccatcttttcatattgttttgcctcttg 31564615  T
Q  305 tggattgatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttt 404  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31564616 tggattgatatatttgaacttatacactcatattagcacttgtgagactgtttcgaagagttaatggaaacaactaatgacatgtccacaaaagttgttt 31564715  T
Q  405 tcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacat 504  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  31564716 tcagcttatttccatatgttgtctagaaaagcttatgaaaatcacttgtaggaaaacagtgtgacttcattttatcttgttataaaaatagcttatacat 31564815  T
Q  505 aagcaattttatgataagtgtttatctt 532  Q
    | ||||||||||||||||||||||||||    
T  31564816 atgcaattttatgataagtgtttatctt 31564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 311 - 557
Target Start/End: Complemental strand, 33385670 - 33385424
Alignment:
Q  311 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 410  Q
    |||| ||||||||||||  | | |||| ||||||||||| ||||||| |||||||| ||||||||| |  |||||||||||| |||||||||||||||||    
T  33385670 gatgcatttgaacttatctactgatataagcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatgtccataaaagttgttttcagct 33385571  T
Q  411 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagc 508  Q
    | ||||| ||   ||||||||||||||||||||||| |||||||| | |  |||||||||||||||||||  ||| ||||||||| |||||||||| |||    
T  33385570 tttttccataaactgtctagaaaagcttatgaaaatagcttatagcata--agtatgacttcattttatcttttgttataaaaattgcttatacatcagc 33385473  T
Q  509 aattttatgataagtgtttatcttgtaagctttaattaggttatttatc 557  Q
    | || ||||  ||||| ||||||| |||| ||| |||||| | ||||||    
T  33385472 acttatatgtaaagtgcttatcttataagttttcattaggctgtttatc 33385424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 311 - 601
Target Start/End: Complemental strand, 33259959 - 33259660
Alignment:
Q  311 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 410  Q
    |||||||||||||||||| | | |||| ||||||||  | ||||||| |||||||| ||||||||  | ||||||||||||| ||||| ||||||||||     
T  33259959 gatgtatttgaacttatatattgatataagcacttgccaaactgtttggaagagtttatggaaacggctaatgacatgtccataaaagctgttttcagcc 33259860  T
Q  411 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttatag-------gaaaacagtatgacttcattttatctt--gctataaaaatagcttata 501  Q
      ||| | |||  ||| ||||||||||||||||||| ||||||||       |||||||||||||||||| ||||||||  | |||||||||||||||||    
T  33259859 attttacatatactgtatagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttata 33259760  T
Q  502 cataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaat 601  Q
    |||||||| || ||||  |||   ||||||| ||||||| ||||||| | ||||||||||| | ||||||| |||| |||||  | || |||||||||||    
T  33259759 cataagcacttatatgtaaagctcttatcttataagcttgaattaggctgtttatccaaacaaggtcttaggtttccagccttcttacatatctttgaat 33259660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
Q  110 cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca 205  Q
    |||||||  ||||||||||||| |||||| |||||||||||||||||     |||| ||||| ||||||||| ||| |||||||||||||||||| ||||    
T  33416536 cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca 33416437  T
Q  206 gatttgaatttatacatgtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||  | ||||||||||||||    
T  33416436 gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt 33416366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 485 - 601
Target Start/End: Complemental strand, 33416345 - 33416229
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctg 584  Q
    ||||||||||||||||||||||||| ||| || || || | ||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||| |||    
T  33416345 tataaaaatagcttatacataagcactttgataatgagcgcttatcttataagctttaattaggttgtttatccaaacaaggtcatggttttctagtctg 33416246  T
Q  585 ttcacctatctttgaat 601  Q
    |||||||||||||||||    
T  33416245 ttcacctatctttgaat 33416229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 33385837 - 33385707
Alignment:
Q  24 agtacaagttgaagatgaagaagttgcaattgcatccgaga-caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg 122  Q
    |||||||||||||| ||||||||||||||||||||   | | ||||||||| | ||||||| ||||||||||||||||| |||||  | |||||  ||||    
T  33385837 agtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaagg 33385738  T
Q  123 ctcgagtaatggtttcaatttcatcttattt 153  Q
    || ||| || |||| ||||||||||||||||    
T  33385737 cttgagcaaaggttgcaatttcatcttattt 33385707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 492 - 601
Target Start/End: Original strand, 24631975 - 24632084
Alignment:
Q  492 atagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacct 591  Q
    ||||||||| |||||||| || ||||||||| ||||||||| |||  |||||||| |||  |||||||||| | |||||||||||| | | ||||||||     
T  24631975 atagcttatgcataagcacttatatgataagcgtttatcttataatatttaattaagttgcttatccaaacgaggtcttagttttccaacttgttcacca 24632074  T
Q  592 atctttgaat 601  Q
    ||||||||||    
T  24632075 atctttgaat 24632084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 562
Target Start/End: Complemental strand, 9165418 - 9165306
Alignment:
Q  451 tataggaaaacagtatgacttcatttta--tcttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 548  Q
    |||||||||||||||||||||||| |||  | ||| ||||||||||||||||||||||| | || |||| ||||   ||||||| |||||||||||||||    
T  9165418 tataggaaaacagtatgacttcatcttaccttttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataagctttaattagg 9165320  T
Q  549 ttatttatccaaac 562  Q
       |||||||||||    
T  9165319 gcgtttatccaaac 9165306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 440
Target Start/End: Original strand, 24631864 - 24631970
Alignment:
Q  334 atattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaa 433  Q
    |||| ||||||||||| ||| ||| |||||||| |||||||||||  |||| ||||||| ||||| |||||| |||||||||||  | | ||| ||||||    
T  24631864 atataagcacttgtgaaactatttggaagagtttatggaaacaactcatgatatgtccataaaagctgtttttagcttatttccaaaagctgtttagaaa 24631963  T
Q  434 agcttat 440  Q
    |||||||    
T  24631964 agcttat 24631970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 522
Target Start/End: Original strand, 29274300 - 29274376
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 522  Q
    ||||||| ||||||| | |||||| ||||||||||  |||||| |||||||||||||||||||| || |||||||||    
T  29274300 gcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 33281376 - 33281320
Alignment:
Q  39 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 98  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33281376 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 33281320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 33416592 - 33416538
Alignment:
Q  27 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatct 81  Q
    |||||||||||||||||  |||||||||||||| || ||||||| ||||||||||    
T  33416592 acaagttgaagatgaagcggttgcaattgcatctgaaacaaacagcaacttatct 33416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 33302003 - 33301947
Alignment:
Q  39 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 98  Q
    |||||| ||||| ||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33302003 tgaagaggttgctattgcatccgagacaaacatca---tatctaattctaatggacaaac 33301947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 281808 - 281881
Alignment:
Q  342 acttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    |||||||||||||||| | |||| |||||||| ||||  ||||||||||   | ||||||||||||||||||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtc--tataagttgttttcagcttatttcc 281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 509
Target Start/End: Original strand, 2034496 - 2034572
Alignment:
Q  434 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagca 509  Q
    ||||||||||||  ||||||| ||||  ||| |||||| |||||||| ||| | |||||| ||||||||||||||||    
T  2034496 agcttatgaaaaaagcttatatgaaagtagtttgactttattttatctttgttgtaaaaacagcttatacataagca 2034572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 119 - 273
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
Q  119 aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat 214  Q
    ||||||||||||| ||||  |||||||||||||||||    |||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||     
T  30653203 aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac 30653301  T
Q  215 ttatacatgtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt 273  Q
    |||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  30653302 ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt 30653360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 400 - 522
Target Start/End: Complemental strand, 11684468 - 11684346
Alignment:
Q  400 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagctta 499  Q
    |||||||| |||||||||||| | | || || | ||||||||||||| ||||||| ||||||||| | |||   || ||| ||| |||||||||||||||    
T  11684468 tgttttcaacttatttccgtaagctctccagcatagcttatgaaaatagcttatatgaaaacagtttcactattttatattttgttataaaaatagctta 11684369  T
Q  500 tacataagcaattttatgataag 522  Q
    ||||| |||| || |||||||||    
T  11684368 tacattagcacttatatgataag 11684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 30653373 - 30653438
Alignment:
Q  381 atgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaat 446  Q
    ||||||||| || ||||| |||||||||||||||||| || | |||||||||||||||||||||||    
T  30653373 atgacatgttcataaaagctgttttcagcttatttccataagctgtctagaaaagcttatgaaaat 30653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 32059660 - 32059742
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt-gctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    ||||||| ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||| || |||||||||| |||||    
T  32059660 gcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttat 32059742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 529
Target Start/End: Complemental strand, 10391313 - 10391269
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  10391313 tataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 11457209 - 11457158
Alignment:
Q  341 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtcca 392  Q
    ||||||||||||||||| |||||| | |||||||||||  ||||||||||||    
T  11457209 cacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtcca 11457158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 529
Target Start/End: Original strand, 29115328 - 29115367
Alignment:
Q  490 aaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  29115328 aaatagcttatacataagcacttttatgataaatgtttat 29115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 19113227 - 19113263
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataa 521  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  19113227 tataaaaatagtttatacataagcaattatatgataa 19113263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 311 - 547
Target Start/End: Complemental strand, 4047 - 3802
Alignment:
Q  311 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 410  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| ||||||||  |  |||||||||||| ||||| ||||||||||     
T  4047 gatgtatttgaacttatatattgatataagcacttgtgagactgtttggaagagtttatggaaacggctcatgacatgtccataaaagctgttttcagcc 3948  T
Q  411 tatttccgtatgttgtctagaaaagcttatgaaaatcgct-------tataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttata 501  Q
      ||| | |||  ||||||||||||||||||||||| |||       ||||||||||||||||||||||| ||||||  ||| ||||||||||||||| |    
T  3947 attttacatatactgtctagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcagtttatcttttgttataaaaatagcttaca 3848  T
Q  502 cataagcaattttatgataagtgtttatcttgtaagctttaattag 547  Q
    |||||||| || ||||  ||| | ||||||| ||||||| ||||||    
T  3847 cataagcacttatatgtaaagcgcttatcttataagcttgaattag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 12876 - 12932
Alignment:
Q  39 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 98  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  12876 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 12932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 17443374 - 17443503
Alignment:
Q  27 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcg 126  Q
    ||||||||||  ||||||||||||||||||||  || ||||||||   | ||||||| ||||||||||||||| |||||||  |||||||  |||||| |    
T  17443374 acaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttg 17443473  T
Q  127 agtaatggtttcaatttcatcttatttgct 156  Q
    |  || |||| |||||||||||||||||||    
T  17443474 accaaaggttgcaatttcatcttatttgct 17443503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 17443537 - 17443602
Alignment:
Q  311 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaaca 376  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| |||||||||    
T  17443537 gatgtatttgaacttatatactgatataagcacttgtgagactgtttggaagagtttatggaaaca 17443602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 34339122 - 34339039
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    ||||||| ||||||||| |||||| ||||||||||  |||||| ||| || ||||||||||||| || ||||||||||||||||    
T  34339122 gcttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 3102657 - 3102617
Alignment:
Q  481 ttgctataaaaatagcttatacataagcaattttatgataa 521  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  3102657 ttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 14299588 - 14299663
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttc 416  Q
    |||||||| | |||||||| |||||||| |||||||||||  ||||||| |||| | |  ||||||||||||||||||    
T  14299588 agcacttgagggactgtttggaagagtttatggaaacaacttatgacatatccataca--ttgttttcagcttatttc 14299663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 7103554 - 7103615
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagca 509  Q
    |||||||  |||||||| |||||| ||||||||||| |||||| |||| || ||||||||||    
T  7103554 gcttatattaaaacagtttgactttattttatcttgttataaatatagtttctacataagca 7103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 509
Target Start/End: Original strand, 18962109 - 18962172
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagca 509  Q
    ||||||| ||||||||| | |||| ||||||||||  | ||||||||||||| |||||||||||    
T  18962109 gcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagca 18962172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 43199982 - 43199930
Alignment:
Q  305 tggattgatgtatttgaacttatacagtcatattagcacttgtgagactgttt 357  Q
    |||||| || |||||||||||||  | |||||| |||||||||||||||||||    
T  43199982 tggattcatttatttgaacttatctactcatataagcacttgtgagactgttt 43199930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 13000381 - 13000457
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    ||||||||||||||| |||  ||||||| |||| ||||||  |||||||||||||  ||||||||||||||||||||||    
T  13000381 agcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccac--aagttgttttcagcttatttcc 13000457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 524
Target Start/End: Complemental strand, 26717246 - 26717178
Alignment:
Q  456 gaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtg 524  Q
    ||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||||||    
T  26717246 gaaaatagtttgactttattttatcttgttataaaattagcttattcagaagcacttatatgataagtg 26717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 520
Target Start/End: Complemental strand, 5290649 - 5290566
Alignment:
Q  434 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 520  Q
    |||||||||| || ||||| | ||||||||| |||||  ||||||| ||| |||| |||||||||||||||||||| || |||||||    
T  5290649 agcttatgaatatagcttacatgaaaacagtttgact--attttat-ttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 529
Target Start/End: Original strand, 26716527 - 26716590
Alignment:
Q  466 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||||| |||| |||||| |||| || ||||||||||||||||| || ||| ||||||||||||    
T  26716527 tgactttatttaatcttgttatagaagtagcttatacataagcacttatataataagtgtttat 26716590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 30191098 - 30191174
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    ||||||||| ||||||||| | |||| | |||||||||||  |||||||||   ||||| |||||||||||||||||||    
T  30191098 agcacttgttagactgtttgggagagcttatggaaacaacttatgacatgt--tcaaaacttgttttcagcttatttcc 30191174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 482
Target Start/End: Original strand, 10079082 - 10079168
Alignment:
Q  396 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatctt 482  Q
    |||||||||| ||||| ||||| ||   | || |||| |||| |||||||  ||||||| ||||||||| |||||||||||||||||    
T  10079082 aagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttatacgaaaacagtttgacttcattttatctt 10079168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 445
Target Start/End: Complemental strand, 30389157 - 30389108
Alignment:
Q  396 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaa 445  Q
    |||||||||||||||||||| | || ||| ||||| ||||||||||||||    
T  30389157 aagttgttttcagcttattttcataagttctctaggaaagcttatgaaaa 30389108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 522
Target Start/End: Original strand, 34788498 - 34788574
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 522  Q
    ||||||| | ||||||| |||||| ||||||||||  |  ||||||||||||||||| |||||| || |||||||||    
T  34788498 gcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 6918991 - 6918955
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataa 521  Q
    ||||||||||||||||||||||||| || ||||||||    
T  6918991 tataaaaatagcttatacataagcacttatatgataa 6918955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 8536123 - 8536191
Alignment:
Q  451 tataggaaaacagtatgacttca-ttttatcttgctataaaaatagcttatacataagcaattttatga 518  Q
    |||| ||||||| | |||||||| |||||| ||| |||| |||||||||||||||||||| || |||||    
T  8536123 tatatgaaaacaatttgacttcacttttattttgttatagaaatagcttatacataagcacttatatga 8536191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 417
Target Start/End: Complemental strand, 43115167 - 43115093
Alignment:
Q  341 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    ||||||||||| ||||| |||||||| |||||||||||  ||||||||||  || || |||||||||||||||||||    
T  43115167 cacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtc--cataacttgttttcagcttatttcc 43115093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 38462277 - 38462197
Alignment:
Q  451 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||| ||||||||| |||||| ||||||||||  | |||| |||||||||||| |||| || || ||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 522
Target Start/End: Complemental strand, 22232824 - 22232749
Alignment:
Q  449 cttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataag 522  Q
    |||||| ||||||||| |||||| ||||||||  ||| |||| ||||||||||||||| |||| || |||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 538
Target Start/End: Original strand, 3015928 - 3016011
Alignment:
Q  456 gaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc 538  Q
    ||||||||| ||||||||||||||| ||| |||| |||||  | ||||||||||| || ||| |||||||||||| || |||||    
T  3015928 gaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgttataagc 3016011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 37273247 - 37273171
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    |||||| |||||||||||| | |||| | |||||||||||  ||||||||||  || |||||||||||| |||||||||    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtc--cataagttgttttcaacttatttcc 37273171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 414
Target Start/End: Complemental strand, 24624344 - 24624250
Alignment:
Q  318 ttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatt 414  Q
    ||||||||||  | ||| |||||||||||| ||||||||| |||||| | ||| ||||| |  |||||||||||| |||   |||||||||||||||    
T  24624344 ttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaa--ctgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 16790466 - 16790502
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataa 521  Q
    ||||||||||||||||||||||||| || ||||||||    
T  16790466 tataaaaatagcttatacataagcacttatatgataa 16790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 521
Target Start/End: Original strand, 51278236 - 51278303
Alignment:
Q  456 gaaaacagtatgacttcattt--tatcttgctataaaaatagcttatacataagcaattttatgataa 521  Q
    ||||||||| |||||| ||||  ||| ||| |||| ||||||||||||||| ||||||| ||||||||    
T  51278236 gaaaacagtttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgataa 51278303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 454
Target Start/End: Complemental strand, 3468725 - 3468614
Alignment:
Q  341 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttat 440  Q
    ||||| ||||||||||||| ||||||  |||||||||| |||||||||||  || ||||||||| || |||||||||  | ||| ||||| | || ||||    
T  3468725 cacttttgagactgtttcggagagttgttggaaacaactaatgacatgtc--cataagttgtttccaacttatttccacaagttctctaggatagattat 3468628  T
Q  441 gaaaatcgcttata 454  Q
    |||||  |||||||    
T  3468627 gaaaaaagcttata 3468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 3610811 - 3610894
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||||||  |||||||| || ||||||||||||||  | | || |||||||||||||||||||| || ||||| ||||||||||    
T  3610811 gcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 521
Target Start/End: Original strand, 26935573 - 26935696
Alignment:
Q  400 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagct 497  Q
    |||||||||||||||||| || | | | ||||| || |||||||||| ||| ||| ||||||| | | || | ||||||||  ||| |||||||||||||    
T  26935573 tgttttcagcttatttccataagctctttagaatagattatgaaaatagctcatatgaaaacaatttaaccttattttatcatttgttataaaaatagct 26935672  T
Q  498 tatacataagcaattttatgataa 521  Q
    || ||| ||||| || ||||||||    
T  26935673 tacacaaaagcacttatatgataa 26935696  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 563
Target Start/End: Original strand, 22388014 - 22388093
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc-tttaattaggttatttatccaaact 563  Q
    |||| ||||||||||| |||||||| ||  ||||||||||||||| || |||||  ||||||| ||| ||||||||||||    
T  22388014 tatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaact 22388093  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 521
Target Start/End: Complemental strand, 7244693 - 7244626
Alignment:
Q  456 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataa 521  Q
    ||||||||| ||||||  |||||||||  | |||| |||||||||||||||||||| || ||||||||    
T  7244693 gaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataa 7244626  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 529
Target Start/End: Complemental strand, 23721461 - 23721417
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||| |||||| ||||||||||||| ||| |||||||||||||||    
T  23721461 tatagaaatagtttatacataagcactttgatgataagtgtttat 23721417  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 33894621 - 33894559
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagca 509  Q
    ||||||| ||||||||| |||||| ||||||||||  | |||| ||||||||||||||||||||    
T  33894621 gcttatatgaaaacagtttgactt-attttatcttttgttatagaaatagcttatacataagca 33894559  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 522
Target Start/End: Complemental strand, 35536105 - 35536030
Alignment:
Q  449 cttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 522  Q
    |||||| ||||||| | |||||| ||||||||||  | |||| |||||||||||||||||||  || |||||||||    
T  35536105 cttatatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagcctttatatgataag 35536030  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 39345581 - 39345508
Alignment:
Q  342 acttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    |||||||||||||||| | |||||| |||||||||    ||||||||||  || |||||| |||||||||||||||    
T  39345581 acttgtgagactgtttggtagagttcatggaaacagtttatgacatgtc--cataagttgctttcagcttatttcc 39345508  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 45078253 - 45078217
Alignment:
Q  485 tataaaaatagcttatacataagcaattttatgataa 521  Q
    ||||||||||||||||||||||||| || ||||||||    
T  45078253 tataaaaatagcttatacataagcacttatatgataa 45078217  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 466 - 519
Target Start/End: Complemental strand, 44207750 - 44207697
Alignment:
Q  466 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgat 519  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| || ||||||    
T  44207750 tgactttattttatcttgctataaaaatagcttacatataagcacttgtatgat 44207697  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 15581367 - 15581316
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtc 390  Q
    ||||||||||||| ||||| |||||| |||||||||||||  ||||||||||    
T  15581367 agcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtc 15581316  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 11639512 - 11639568
Alignment:
Q  473 attttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 529  Q
    |||||||||||  |||||||||||||| ||||||| | ||  |||||||||||||||    
T  11639512 attttatcttgtcataaaaatagcttacacataaggacttacatgataagtgtttat 11639568  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 28837002 - 28837075
Alignment:
Q  339 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatt 414  Q
    ||||||||||||||||||| ||||| ||||   ||||| | |||||||||  |||| ||| |||||||||||||||    
T  28837002 agcacttgtgagactgtttagaagacttaaccaaaacagctaatgacatg--cacataagctgttttcagcttatt 28837075  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 30014095 - 30014139
Alignment:
Q  401 gttttcagcttatttccgtatgttgtctagaaaagcttatgaaaa 445  Q
    |||||||||||||||||||| ||| ||||| | ||||||||||||    
T  30014095 gttttcagcttatttccgtaagttctctagcatagcttatgaaaa 30014139  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 504
Target Start/End: Complemental strand, 44422698 - 44422642
Alignment:
Q  448 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacat 504  Q
    ||||||| ||||||||| |||  | |||||||| || ||||||||||||||||||||    
T  44422698 gcttatatgaaaacagtttgagattattttatcatgttataaaaatagcttatacat 44422642  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 522
Target Start/End: Original strand, 50764489 - 50764521
Alignment:
Q  490 aaatagcttatacataagcaattttatgataag 522  Q
    ||||||||||||||||||||||| |||||||||    
T  50764489 aaatagcttatacataagcaattgtatgataag 50764521  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 507
Target Start/End: Original strand, 21335 - 21410
Alignment:
Q  434 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttg--ctataaaaatagcttatacataag 507  Q
    ||||||||||||  ||||||| ||||||| | | |||| ||||||||||   ||||||||||||||||||||||||    
T  21335 agcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 520
Target Start/End: Original strand, 32920489 - 32920543
Alignment:
Q  466 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 520  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || || |||||||    
T  32920489 tgactttattttatcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 47970309 - 47970240
Alignment:
Q  456 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagt 523  Q
    ||||| ||| |||||||||||||||||  | |||| |||||||||||||||||||| || ||||| ||||    
T  47970309 gaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 506
Target Start/End: Original strand, 55437345 - 55437415
Alignment:
Q  436 cttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataa 506  Q
    ||||||||||| ||||||| ||||| | | |||||| ||||||| ||| |||| |||||||||||| ||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataa 55437415  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 416
Target Start/End: Original strand, 9843212 - 9843285
Alignment:
Q  341 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttc 416  Q
    |||||||||||||||||| ||||| | | | ||||||| ||| |||| |||| ||  |||||||||||||||||||    
T  9843212 cacttgtgagactgtttcaaagagattaagaaaacaactaatcacatatccataa--gttgttttcagcttatttc 9843285  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 10577 - 10650
Alignment:
Q  342 acttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 417  Q
    ||||||||||||||||   | || | ||| ||||||| ||||||||||||| ||  ||||||||||||||||||||    
T  10577 acttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataa--gttgttttcagcttatttcc 10650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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