View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3273_low_76 (Length: 242)
Name: NF3273_low_76
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3273_low_76 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23907 - 23687
Alignment:
| Q |
1 |
cgtgttccaccacttcaatattatcgaacaaccaaaccatattcattactcatccaaccatccatctacgtgtgacttcccaatccatcttctcagttcc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23907 |
cgtgttccaccacttcaataatatcgaacaaccaaaccatattcattactcatccaaccatccatctacgtgtgacttcccaatccatcttctcagttcc |
23808 |
T |
|
| Q |
101 |
caatcctcactgtcgtgttctcctatcctatgttcctgttctcttcctccattcatatactatccacaacacttcatcatcttcacaaaccaacatgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23807 |
caatcctcactgtcgtgttctcctatcctatgttcctgttctcttcctccattcatatactatccacaacacttcatcatcttcacaaaccaacatgaca |
23708 |
T |
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| Q |
201 |
gaaatcacaaaccttagctta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
23707 |
gaaatcacaaaccttagctta |
23687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21310292 - 21310072
Alignment:
| Q |
1 |
cgtgttccaccacttcaatattatcgaacaaccaaaccatattcattactcatccaaccatccatctacgtgtgacttcccaatccatcttctcagttcc |
100 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21310292 |
cgtgttccaccacttcaataatatcgaacaaccaaaccatattcattactcatccaaccatccatctacgtgtgacttcccaatccatcttctcagttcc |
21310193 |
T |
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| Q |
101 |
caatcctcactgtcgtgttctcctatcctatgttcctgttctcttcctccattcatatactatccacaacacttcatcatcttcacaaaccaacatgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21310192 |
caatcctcactgtcgtgttctcctatcctatgttcctgttctcttcctccattcatatactatccacaacacttcatcatcttcacaaaccaacatgaca |
21310093 |
T |
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| Q |
201 |
gaaatcacaaaccttagctta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
21310092 |
gaaatcacaaaccttagctta |
21310072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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