View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_81 (Length: 238)

Name: NF3273_low_81
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_81
NF3273_low_81
[»] chr4 (1 HSPs)
chr4 (18-238)||(12620673-12620893)
[»] chr2 (2 HSPs)
chr2 (52-213)||(21086560-21086721)
chr2 (44-112)||(34073024-34073092)
[»] chr5 (2 HSPs)
chr5 (49-167)||(8723036-8723154)
chr5 (44-112)||(42763612-42763680)
[»] chr3 (1 HSPs)
chr3 (49-132)||(15788369-15788452)
[»] chr6 (1 HSPs)
chr6 (26-158)||(21697127-21697259)
[»] scaffold0007 (1 HSPs)
scaffold0007 (73-112)||(236379-236418)
[»] scaffold0114 (1 HSPs)
scaffold0114 (44-197)||(13115-13268)
[»] chr8 (1 HSPs)
chr8 (49-110)||(39530609-39530670)
[»] chr1 (1 HSPs)
chr1 (71-112)||(25596491-25596532)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 12620893 - 12620673
Alignment:
Q  18 gatagggagaagtaagaaggcaatactcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagg 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  12620893 gatagggagaagtaagaaggcaatattcagctttatcaaagacaagctgtggtagaaaataaacagctggagtagtaaatgtctgtcaaaagcagaaagg 12620794  T
Q  118 gaagtaatgattaaagttgttctgcaatcaatcccttcgtatgtgatgagcatcttaagattacctaacactctcttagattagcttgagaagatggatg 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12620793 gaagtaatgattaaagttgttctgcagtcaatcccttcgtatgtgatgaccatcttaagattacctaacactctcttagattagattgagaagatggatg 12620694  T
Q  218 aatgcgttctagtgaggaaat 238  Q
    |||| ||||||||||||||||    
T  12620693 aatgtgttctagtgaggaaat 12620673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 21086721 - 21086560
Alignment:
Q  52 atcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcaatcaatcc 151  Q
    |||||||| || ||||||||||| || || |||||||| ||||||||| |||| ||||||| ||||||||| ||||| |||   ||||| ||||| || |    
T  21086721 atcaaagatagagtgtggtagaagattagtagttggagcagtaaatgtttgtctaaagcaggaagggaagtcatgataaaatcggttcttcaatctattc 21086622  T
Q  152 cttcgtatgtgatgagcatcttaagattacctaacactctcttagattagcttgagaagatg 213  Q
    | || ||||| ||||| ||||| |||||||| |||||| | |||||| |  |||||||||||    
T  21086621 catcctatgttatgagtatcttcagattaccaaacactttgttagatgaaattgagaagatg 21086560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 34073092 - 34073024
Alignment:
Q  44 tcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcag 112  Q
    |||| |||||||| ||||| |||||| | ||||| ||||||||||||||||||||| |||| |||||||    
T  34073092 tcagttttatcaaggacagagtgtggcaaaaaattagcagttggagtagtaaatgtttgtccaaagcag 34073024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 8723036 - 8723154
Alignment:
Q  49 tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcaatcaa 148  Q
    |||||||||||  | |||||| ||||||||||||| ||||||||||||||  | || ||||||| |||| |||| |||||||||  ||| || ||| | |    
T  8723036 tttatcaaagatcgagtgtggcagaaaataagcagctggagtagtaaatgcttatccaaagcaggaaggaaagttatgattaaatctgtcctccaagcta 8723135  T
Q  149 tcccttcgtatgtgatgag 167  Q
    ||||||||||||| |||||    
T  8723136 tcccttcgtatgttatgag 8723154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 42763612 - 42763680
Alignment:
Q  44 tcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcag 112  Q
    |||||||||||||||| ||||| ||| | ||||| || || ||||| ||||||||||| || |||||||    
T  42763612 tcagctttatcaaagatagggtttggcaaaaaatcagtagctggagcagtaaatgtctatccaaagcag 42763680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 15788369 - 15788452
Alignment:
Q  49 tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaa 132  Q
    |||||||||||  | |||||| ||||||||||||| ||||||||||||||  | || ||||||| ||||||||| |||||||||    
T  15788369 tttatcaaagatcgagtgtggcagaaaataagcagctggagtagtaaatgcttatccaaagcaggaagggaagttatgattaaa 15788452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 21697127 - 21697259
Alignment:
Q  26 gaagtaagaaggcaatactcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaat 125  Q
    |||||||||||||||   ||||||| ||||| || || || ||| |||| || || || ||||||||||||||  |||| ||||||| ||||||||| ||    
T  21697127 gaagtaagaaggcaaccttcagcttcatcaaggatagagtttggcagaagattagtagctggagtagtaaatgcttgtccaaagcaggaagggaagtcat 21697226  T
Q  126 gattaaagttgttctgcaatcaatcccttcgta 158  Q
    ||| |||   ||||| ||||| || ||||||||    
T  21697227 gatcaaatcagttcttcaatctattccttcgta 21697259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 236418 - 236379
Alignment:
Q  73 aaaataagcagttggagtagtaaatgtctgtcaaaagcag 112  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  236418 aaaattagcagttggagtagtaaatgtctgtccaaagcag 236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 13268 - 13115
Alignment:
Q  44 tcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgca 143  Q
    ||||||||||||| || || |||||| | | ||| || |||||||| || |||||| |||| ||||| |  ||||| || ||||| |||  |||||| ||    
T  13268 tcagctttatcaaggatagagtgtggcaaagaattagtagttggagcagcaaatgtttgtctaaagctgggagggaggttatgatcaaatctgttcttca 13169  T
Q  144 atcaatcccttcgtatgtgatgagcatcttaagattacctaacactctcttaga 197  Q
    | | || || || ||||| ||||||||||| |||||||| |||| ||| |||||    
T  13168 agctattccatcttatgtcatgagcatctttagattaccaaacattctattaga 13115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 39530609 - 39530670
Alignment:
Q  49 tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagc 110  Q
    ||||| ||||| || |||||| |||||||||  |||||||||||||| |||||||| |||||    
T  39530609 tttattaaagatagagtgtggcagaaaataaatagttggagtagtaagtgtctgtctaaagc 39530670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 25596532 - 25596491
Alignment:
Q  71 agaaaataagcagttggagtagtaaatgtctgtcaaaagcag 112  Q
    ||||||| || ||||||||||| |||||||||||||||||||    
T  25596532 agaaaattagtagttggagtagcaaatgtctgtcaaaagcag 25596491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University