View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_83 (Length: 237)

Name: NF3273_low_83
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_83
NF3273_low_83
[»] chr1 (1 HSPs)
chr1 (1-217)||(15330327-15330543)
[»] chr7 (11 HSPs)
chr7 (6-217)||(11374243-11374454)
chr7 (6-217)||(11377425-11377639)
chr7 (96-215)||(12646357-12646476)
chr7 (96-217)||(12504859-12504980)
chr7 (96-215)||(12485753-12485872)
chr7 (96-215)||(12507185-12507304)
chr7 (96-215)||(12658071-12658190)
chr7 (96-217)||(12483429-12483550)
chr7 (130-217)||(12539907-12539994)
chr7 (154-215)||(12623771-12623833)
chr7 (7-73)||(12651758-12651824)
[»] chr8 (1 HSPs)
chr8 (100-221)||(35396130-35396251)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 15330327 - 15330543
Alignment:
Q  1 gcctcaataaatatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgattggaggggcagtgtgatgtttctggagagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15330327 gcctcaataaatatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgcttggaggggcagtgtgatgtttctggagagca 15330426  T
Q  101 tgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatctttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15330427 tgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatctttt 15330526  T
Q  201 ggagaggatgcttgtgg 217  Q
    |||||||||||||||||    
T  15330527 ggagaggatgcttgtgg 15330543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 11374454 - 11374243
Alignment:
Q  6 aataaatatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgattggaggggcagtgtgatgtttctggagagcatgacg 105  Q
    ||||||| | ||||||||||| ||||| |||||||||||| | ||||||||||| |||||||| |||| || | | |||||||||||  ||   | |||     
T  11374454 aataaatctcttgacatcatgcgggttaaagccagaagagttaccacatttgaggcggaacgactggatggtctgcgtgatgtttctcaaggtaaagact 11374355  T
Q  106 gagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatcttttggaga 205  Q
    |||||||| ||| |   |||||||| ||| ||||||||||||||||| |||||||| |||||||| || ||  |||||||||||| |||||| |||||||    
T  11374354 gagtagacaaaatgtagaaaagtggagaattctgtaaagttttggtcatcgaagtcaagagtgaggacggagagccacaatgggttccatctcttggaga 11374255  T
Q  206 ggatgcttgtgg 217  Q
    ||||||| ||||    
T  11374254 ggatgctagtgg 11374243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 11377639 - 11377425
Alignment:
Q  6 aataaatatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgattggaggg---gcagtgtgatgtttctggagagcatg 102  Q
    ||||||| | ||||||||||| ||||| |||||||||||| | ||||||||||| |||||||| |||| ||   |||| |||||||||||  ||   |||    
T  11377639 aataaatctcttgacatcatgcgggttaaagccagaagagttaccacatttgaggcggaacgactggatggtctgcagcgtgatgtttctcaaggcaatg 11377540  T
Q  103 acggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatcttttgg 202  Q
    || |||||||| ||| | | |||||||| ||| ||||| ||||||||||| |||||||| || ||||| || ||  |||||||||||| |||||| ||||    
T  11377539 actgagtagacaaaatgtcgaaaagtggagaattctgtgaagttttggtcatcgaagtcaagtgtgaggacggagagccacaatgggttccatctcttgg 11377440  T
Q  203 agaggatgcttgtgg 217  Q
    |||||||||| ||||    
T  11377439 agaggatgctagtgg 11377425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 12646476 - 12646357
Alignment:
Q  96 gagcatgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccat 195  Q
    |||||||||||||||||| ||| | | |||||||||||||||||| ||||||  ||||||||| | ||||||||| | |||||||||||| || | ||||    
T  12646476 gagcatgacggagtagacaaaatgtcgaaaagtggcgaaatctgtgaagtttctgtcgtcgaaatggagagtgaggagtgaatgccacaaaggtttccat 12646377  T
Q  196 cttttggagaggatgcttgt 215  Q
    ||||||||||||||| ||||    
T  12646376 cttttggagaggatggttgt 12646357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 12504980 - 12504859
Alignment:
Q  96 gagcatgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccat 195  Q
    ||||||||| |||||||||||| | | ||||| |  ||| ||||||||| |||| |||||||||| |||||||| |||||| ||||||||||| | ||||    
T  12504980 gagcatgactgagtagacgaaaagtcgaaaagcgtggaagtctgtaaagctttgatcgtcgaagttgagagtgaaaactgagtgccacaatggattccat 12504881  T
Q  196 cttttggagaggatgcttgtgg 217  Q
    ||||||||||| ||||||||||    
T  12504880 cttttggagagaatgcttgtgg 12504859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 12485872 - 12485753
Alignment:
Q  96 gagcatgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccat 195  Q
    ||||||||| |||||||| ||| | | |||||||  ||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||| | ||||    
T  12485872 gagcatgacagagtagacaaaatgtcgaaaagtgtggaagtctgtaaagctttggtcgtcgaagtcgagagtgaaaactgagtgccacaatggattccat 12485773  T
Q  196 cttttggagaggatgcttgt 215  Q
    ||||  ||||| ||||||||    
T  12485772 ctttgagagagaatgcttgt 12485753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 12507304 - 12507185
Alignment:
Q  96 gagcatgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccat 195  Q
    ||||||||| |||||||| ||| | | |||||||  ||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||| | ||||    
T  12507304 gagcatgacagagtagacaaaatgtcgaaaagtgtggaagtctgtaaagctttggtcgtcgaagtcgagagtgaaaactgagtgccacaatggattccat 12507205  T
Q  196 cttttggagaggatgcttgt 215  Q
    ||||  ||||| ||||||||    
T  12507204 ctttgagagagaatgcttgt 12507185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 12658190 - 12658071
Alignment:
Q  96 gagcatgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccat 195  Q
    ||||||||| |||||||| ||| | | |||||||  ||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||| | ||||    
T  12658190 gagcatgacagagtagacaaaatgtcgaaaagtgtggaagtctgtaaagctttggtcgtcgaagtcgagagtgaaaactgagtgccacaatggattccat 12658091  T
Q  196 cttttggagaggatgcttgt 215  Q
    ||||  ||||| ||||||||    
T  12658090 ctttaagagagaatgcttgt 12658071  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 12483550 - 12483429
Alignment:
Q  96 gagcatgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccat 195  Q
    ||||||||| |||||||||||| |   ||||| |  ||| ||||||||| |||| |||||||||| |||||||| |||||| ||||||||||| | ||||    
T  12483550 gagcatgactgagtagacgaaaagtagaaaagcgtggaagtctgtaaagctttgatcgtcgaagttgagagtgaaaactgagtgccacaatggattccat 12483451  T
Q  196 cttttggagaggatgcttgtgg 217  Q
    ||||||||||| ||||||||||    
T  12483450 cttttggagagaatgcttgtgg 12483429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 12539994 - 12539907
Alignment:
Q  130 gcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatcttttggagaggatgcttgtgg 217  Q
    |||||||||| ||||   |||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||    
T  12539994 gcgaaatctgcaaagccatggtcgtcgaagtcgagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtgg 12539907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 12623771 - 12623833
Alignment:
Q  154 tcgaagtcgagagtgagaactgaatgccacaatgg-gtaccatcttttggagaggatgcttgt 215  Q
    |||||||||||||||||||||||  ||||||| ||  | ||||||||||||||||||||||||    
T  12623771 tcgaagtcgagagtgagaactgagagccacaacggatttccatcttttggagaggatgcttgt 12623833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 12651824 - 12651758
Alignment:
Q  7 ataaatatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgattgga 73  Q
    ||||||| ||||||||| ||   ||||||||||||||||   ||||||||||| |||||||||||||    
T  12651824 ataaataaattgacatcgtgattgttgaagccagaagagtcaccacatttgagtcggaacgattgga 12651758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 35396251 - 35396130
Alignment:
Q  100 atgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatcttt 199  Q
    ||||| |||||||| ||| | |||||||||||||| ||| ||| ||||||||| |||||||| |||||||| || ||  |||||||||||| |||||| |    
T  35396251 atgactgagtagacaaaatgtctaaaagtggcgaattctctaaggttttggtcatcgaagtcaagagtgaggacggagagccacaatgggttccatctct 35396152  T
Q  200 tggagaggatgcttgtggtggc 221  Q
    | ||||||||||| ||||||||    
T  35396151 tagagaggatgctagtggtggc 35396130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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