View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_84 (Length: 237)

Name: NF3273_low_84
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_84
NF3273_low_84
[»] chr1 (5 HSPs)
chr1 (132-222)||(31131961-31132051)
chr1 (1-87)||(31131830-31131916)
chr1 (134-222)||(31077937-31078025)
chr1 (158-222)||(31127279-31127343)
chr1 (6-75)||(31077809-31077878)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 31131961 - 31132051
Alignment:
Q  132 ccttggaatcggtggatcttttgtcgcgatttttaagttctggtcattcggacgaatcttttgtagttgatattgtgataagctttattct 222  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31131961 ccttggaatcggtggatattttgtcgcgatttttaagttctggtcattcggacgaatcttttgtagttgatattgtgataagctttattct 31132051  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31131830 - 31131916
Alignment:
Q  1 atttttatggaaagtgaaaaaattcctaaacattggaaccaagcgacggttgaaagaagctgtcgctgaagtaagggggctcgccac 87  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  31131830 atttttatggaaagtgaaaaaattcctaaacattggacccgagcgacggttgaaagaagctgtcgctgaagtaagggggctcgccac 31131916  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 31077937 - 31078025
Alignment:
Q  134 ttggaatcggtggatcttttgtcgcgatttttaagttctggtcattcggacgaatcttttgtagttgatattgtgataagctttattct 222  Q
    |||||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  31077937 ttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattct 31078025  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 31127279 - 31127343
Alignment:
Q  158 cgatttttaagttctggtcattcggacgaatcttttgtagttgatattgtgataagctttattct 222  Q
    |||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||||||||||||    
T  31127279 cgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagctttattct 31127343  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 31077809 - 31077878
Alignment:
Q  6 tatggaaagtgaaaaaattcctaaacattggaaccaagcgacggttgaaagaagctgtcgctgaagtaag 75  Q
    ||||||||||||| ||| |  ||||||| || | | ||||||| ||||||||||| ||||||||||||||    
T  31077809 tatggaaagtgaagaaaatattaaacatagggatcgagcgacgattgaaagaagccgtcgctgaagtaag 31077878  T

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