View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_85 (Length: 231)

Name: NF3273_low_85
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_85
NF3273_low_85
[»] chr3 (4 HSPs)
chr3 (144-213)||(34027539-34027608)
chr3 (23-82)||(34027418-34027477)
chr3 (148-212)||(34017743-34017807)
chr3 (30-82)||(34017625-34017677)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 34027539 - 34027608
Alignment:
Q  144 aactaccactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcaccacctcacttat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34027539 aactaccactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcaccacctcacttat 34027608  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 34027418 - 34027477
Alignment:
Q  23 tcgacccaaacaccggttactgttctcattccagaaccttccacagcctccgtccaatcg 82  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34027418 tcgacccaaacaccggttactgttctcattctagaaccttccacagcctccgtccaatcg 34027477  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 34017743 - 34017807
Alignment:
Q  148 accactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcaccacctcactta 212  Q
    ||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||| ||||||||    
T  34017743 accactgccgtgtccaacaacaccaccgccctcatcgacgccaccaccgaccaccatctcactta 34017807  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 34017625 - 34017677
Alignment:
Q  30 aaacaccggttactgttctcattccagaaccttccacagcctccgtccaatcg 82  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  34017625 aaacaccggttactgttctctttctagaaccttccatagcctccgtccaatcg 34017677  T

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