View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_9 (Length: 521)

Name: NF3273_low_9
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_9
NF3273_low_9
[»] chr8 (10 HSPs)
chr8 (222-511)||(9032743-9033032)
chr8 (20-152)||(39655604-39655739)
chr8 (20-156)||(17028432-17028569)
chr8 (20-156)||(17558868-17559005)
chr8 (38-155)||(21347198-21347316)
chr8 (67-153)||(31183821-31183907)
chr8 (20-59)||(1788900-1788939)
chr8 (22-59)||(38676893-38676930)
chr8 (24-59)||(17088771-17088806)
chr8 (20-59)||(21185322-21185361)
[»] chr1 (7 HSPs)
chr1 (20-150)||(12141561-12141692)
chr1 (20-152)||(4242476-4242609)
chr1 (21-154)||(51465563-51465695)
chr1 (20-150)||(24981072-24981202)
chr1 (76-150)||(1953802-1953876)
chr1 (99-155)||(26310464-26310520)
chr1 (20-59)||(9111542-9111581)
[»] chr4 (6 HSPs)
chr4 (33-150)||(44643542-44643660)
chr4 (20-75)||(20058087-20058143)
chr4 (20-59)||(13010534-13010573)
chr4 (20-59)||(895520-895559)
chr4 (20-59)||(6667720-6667759)
chr4 (20-59)||(6671392-6671431)
[»] chr7 (6 HSPs)
chr7 (20-150)||(39426361-39426491)
chr7 (22-154)||(3850445-3850577)
chr7 (20-150)||(22301061-22301191)
chr7 (20-150)||(11674078-11674201)
chr7 (20-59)||(31210076-31210115)
chr7 (20-59)||(31206627-31206666)
[»] chr5 (3 HSPs)
chr5 (20-155)||(26702921-26703057)
chr5 (20-155)||(26972654-26972790)
chr5 (20-84)||(18594892-18594957)
[»] chr2 (5 HSPs)
chr2 (20-150)||(14433508-14433639)
chr2 (20-150)||(18739029-18739151)
chr2 (20-59)||(21189479-21189518)
chr2 (22-59)||(2590580-2590617)
chr2 (20-59)||(35969278-35969317)
[»] chr6 (6 HSPs)
chr6 (20-150)||(19697762-19697885)
chr6 (20-122)||(15518094-15518197)
chr6 (86-155)||(19976193-19976262)
chr6 (101-152)||(6591757-6591808)
chr6 (20-70)||(6591838-6591889)
chr6 (86-151)||(19973805-19973870)
[»] chr3 (1 HSPs)
chr3 (59-150)||(11634076-11634167)
[»] scaffold0028 (2 HSPs)
scaffold0028 (20-59)||(127777-127816)
scaffold0028 (20-58)||(110198-110236)
[»] scaffold0076 (1 HSPs)
scaffold0076 (20-61)||(6759-6800)
[»] scaffold0014 (1 HSPs)
scaffold0014 (20-150)||(82699-82822)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 222 - 511
Target Start/End: Original strand, 9032743 - 9033032
Alignment:
Q  222 gtgataattccacatctaattttacaatagagtatagagtatgtacaacatttcagtaacacatgatgtcccttcggacggcaacacatttttgatttcc 321  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9032743 gtgataattccacatctaattttacaatagagcatagagtatgtacaacatttcagtaacacatgatgtcccttcggatggcaacacatttctgatttcc 9032842  T
Q  322 ctttcacaacattaccttattatgtaaccattgttactgatacatcaagacagatgaaaaatcaaggtaaagcacagaacatcaaataacattcagatga 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032843 ctttcacaacattaccttattatgtaaccattgttactgatacatcaagacagatgaaaaatcaaggtaaagcacagaacatcaaataacattcagatga 9032942  T
Q  422 taaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttgtaatcagagtcagatcaatattggatcactcatcctatg 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  9032943 taaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttataatcagagtcagatcaatattggatccctcatcctatg 9033032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 39655739 - 39655604
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaa--gtttcctctaatctgatttgtgaagattttg 116  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||   |||||||| ||| ||||||||||||||||||    
T  39655739 ggataaaatcctcaaggacagtgactatgtcacgcctcaggttacttaacagtgtgttgttttgcacaggtttcctccaatttgatttgtgaagattttg 39655640  T
Q  117 atggagttgtgtcagcaactaaattcgataagtttc 152  Q
    |||||| |||||| ||||  ||||||||||||||||    
T  39655639 atggagctgtgtcggcaatcaaattcgataagtttc 39655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 17028432 - 17028569
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    |||||||||||||||||||||||||| |||| |||||||| |||| ||| ||| | |||||||||| |||| | ||||| ||||||||||||||||||||    
T  17028432 ggataaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcaggttttccctaatttgatttgtgaagattttgat 17028531  T
Q  119 ggagttgtgtcagcaactaaattcgataagtttcttga 156  Q
    ||||| || | | |||||||||||||||||||||||||    
T  17028532 ggagtcgtatgaacaactaaattcgataagtttcttga 17028569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 17558868 - 17559005
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    |||||||||||||||||||||||||| |||| |||||||| |||| ||| ||| | |||||||||| |||| | ||||| ||||||||||||||||||||    
T  17558868 ggataaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcaggttttccctaatttgatttgtgaagattttgat 17558967  T
Q  119 ggagttgtgtcagcaactaaattcgataagtttcttga 156  Q
    ||||| || | | |||||||||||||||||||||||||    
T  17558968 ggagtcgtatgaacaactaaattcgataagtttcttga 17559005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 21347198 - 21347316
Alignment:
Q  38 cagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaact 136  Q
    |||||||||| || |||||||| |||||||||||| ||  |||||||| ||||||| |||| |||||||||||||||||||| ||| ||||||  ||||     
T  21347198 cagtgactatatcacgcctcaggttacttaacagtttgcagttttgcaggtttcctttaatttgatttgtgaagattttgatagagctgtgtcgacaacc 21347297  T
Q  137 aaattcgataagtttcttg 155  Q
    ||||| ||||| |||||||    
T  21347298 aaatttgataaatttcttg 21347316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 31183821 - 31183907
Alignment:
Q  67 acagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttct 153  Q
    ||||||||||| |||||| ||||| |||||  |||||| ||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  31183821 acagtgtgttgatttgcaggtttcttctaagttgatttatgaagattttgatggagctgtgtctacaaccaaattcgataagtttct 31183907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 1788939 - 1788900
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  1788939 ggataaaatcctcaaggacagtgactatgtcacgcctcag 1788900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 38676893 - 38676930
Alignment:
Q  22 ataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcag 38676930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 17088806 - 17088771
Alignment:
Q  24 aaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17088806 aaaatcctcaaggacagtgactatgtcacgcctcag 17088771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 21185361 - 21185322
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  21185361 ggataaaatcctcaaggacagtgactatgtcacgcttcag 21185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 12141692 - 12141561
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| || ||||| | |||| ||||||||||||||||||||    
T  12141692 ggataaaatcctcaaggacagtgactatgtcacgcctcaggttacttaacggtgtgttgttttacatgtttcttttaatttgatttgtgaagattttgat 12141593  T
Q  119 ggagttgtgtcagcaactaaattcgataagtt 150  Q
    | || |||||| ||||| ||||||||||||||    
T  12141592 gaagatgtgtcggcaaccaaattcgataagtt 12141561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 4242609 - 4242476
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    ||||||||||||||||||||  || |||||| || ||||| ||||||||||||||| ||||||||| |||||||| ||| ||||||| ||||||||||||    
T  4242609 ggataaaatcctcaaggacaacgattatgtcacgtctcaggttacttaacagtgtgctgttttgcaggtttcctccaatttgatttgcgaagattttgat 4242510  T
Q  119 ggagttgtgtcagcaactaaattcgataagtttc 152  Q
    |||||||||||  |||| |||||| |||||||||    
T  4242509 ggagttgtgtcgacaaccaaattcaataagtttc 4242476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 51465563 - 51465695
Alignment:
Q  21 gataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatg 119  Q
    |||||||||  ||||||||||||||||||| |||||||| |||||| ||||||| |||||||  | |||||||||| | |||||||||||||||  ||||    
T  51465563 gataaaatctccaaggacagtgactatgtcacgcctcagattactttacagtgtattgttttttaggtttcctctactttgatttgtgaagatt--gatg 51465660  T
Q  120 gagttgtgtcagcaactaaattcgataagtttctt 154  Q
    ||| |||||| ||||| ||||||||||||||||||    
T  51465661 gagctgtgtcggcaaccaaattcgataagtttctt 51465695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 24981202 - 24981072
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    |||||||||||||||||||  |||||||||| ||||||| ||||| ||| ||| | |||||||||| |||||| |||||   |||||||||| ||||| |    
T  24981202 ggataaaatcctcaaggacgctgactatgtcacgcctcaggttacataatagtattttgttttgcaggtttcccctaattaaatttgtgaaggttttg-t 24981104  T
Q  119 ggagttgtgtcagcaactaaattcgataagtt 150  Q
    ||| |||||||  |||||||||||||||||||    
T  24981103 ggaattgtgtcgacaactaaattcgataagtt 24981072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 1953802 - 1953876
Alignment:
Q  76 tgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 150  Q
    ||||||| | |||||||||| | |||||||||||||||||||||| | |||||| ||||| ||||||||||||||    
T  1953802 tgttttgtaggtttcctctactttgatttgtgaagattttgatggggctgtgtcggcaaccaaattcgataagtt 1953876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 26310464 - 26310520
Alignment:
Q  99 tgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 155  Q
    |||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||    
T  26310464 tgatttgtgacgattttgatggagctgtgtcaacaaccaaattcgataagtttcttg 26310520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 9111581 - 9111542
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9111581 ggataaaatcctcaaggacagtgactatgtcacgcctcag 9111542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 44643542 - 44643660
Alignment:
Q  33 aaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcag 131  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| | |||| |    
T  44643542 aaggacagtgactatgtcacgcctcaggttacttaacagcgtgttgttttgcaagtttcttctaatttgatttgtgaagattttgatggagctttgtcgg 44643641  T
Q  132 caactaaattcgataagtt 150  Q
    |||| ||||||||||||||    
T  44643642 caaccaaattcgataagtt 44643660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 20058143 - 20058087
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgt 75  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  20058143 ggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataacagtgtgt 20058087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 13010573 - 13010534
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  13010573 ggataaaatcctcaaggacagtgactatgtcacgcctcag 13010534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 895520 - 895559
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  895520 ggataaaatcctcaaggacagtgactatgtcacgactcag 895559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 6667759 - 6667720
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  6667759 ggataaaatcctcaagaacagtgactatgtcacgcctcag 6667720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 6671431 - 6671392
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  6671431 ggataaaatcctcaaggacggtgactatgtcacgcctcag 6671392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 39426491 - 39426361
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||| ||||| | |||||||||| | ||||||||||| ||||||||    
T  39426491 ggataaaatcctcaaggacagtgactatatcacgcctcagattacttaacagtgcgttattttgtaggtttcctctactttgatttgtgaaaattttgat 39426392  T
Q  119 ggagttgtgtcagcaactaaattcgataagtt 150  Q
    || |||||||| ||||| ||||||||||||||    
T  39426391 gg-gttgtgtccgcaaccaaattcgataagtt 39426361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 3850577 - 3850445
Alignment:
Q  22 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 120  Q
    |||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||| || |||||||||||| |||||||| ||||  |||||||    
T  3850577 ataaaatcatcaaggacagtgactatgtcacgcctcagattacataacagtgtgttgttttacaggtttcctctaatttgatttgtaaaga-cttgatgg 3850479  T
Q  121 agttgtgtcagcaactaaattcgataagtttctt 154  Q
    ||   |||| ||||||||||| ||||||||||||    
T  3850478 agccctgtcggcaactaaatttgataagtttctt 3850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 22301191 - 22301061
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||| | |||||||||| |||||| ||||  |||||||||||| |||||||    
T  22301191 ggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcaggtttcc-ctaaattgatttgtgaaggttttgat 22301093  T
Q  119 ggagttgtgtcagcaactaaattcgataagtt 150  Q
    ||| |  ||||  |||| ||||||||||||||    
T  22301092 ggaatcatgtcgacaaccaaattcgataagtt 22301061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 11674078 - 11674201
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatg 119  Q
    ||||||||||||||||||||||||||||||| | ||||||  |       |||| |||||||||| |||||| |||||   |||||||||| ||||||||    
T  11674078 ggataaaatcctcaaggacagtgactatgtcacacctcaggaa-------gtgttttgttttgcaggtttcccctaattaaatttgtgaaggttttgatg 11674170  T
Q  120 gagttgtgtcagcaactaaattcgataagtt 150  Q
    |||| |||||  |||||||||||||||||||    
T  11674171 gagtcgtgtcgacaactaaattcgataagtt 11674201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 31210115 - 31210076
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  31210115 ggataaaatcctcaaggacagtgactatgtcacgcctcag 31210076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 31206666 - 31206627
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  31206666 ggataaaatcctcaaagacagtgactatgtcacgcctcag 31206627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 26703057 - 26702921
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    ||||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||| |||||| ||| |||||||||||| |||||||||||| |||||||    
T  26703057 ggataaaatcctcaaggacagtgactaagtcacgcatcaggttacataacagtgttttgtttagcaggtttcctctaatttgatttgtgaaggttttgat 26702958  T
Q  119 ggagttgtgtcagcaactaaattcgataagtttcttg 155  Q
    |||||| ||||  | || ||||||||||| |||||||    
T  26702957 ggagttatgtcgacgaccaaattcgataaatttcttg 26702921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 26972790 - 26972654
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    ||||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||| |||||| ||| |||||||||||| |||||||||||| |||||||    
T  26972790 ggataaaatcctcaaggacagtgactaagtcacgcatcaggttacataacagtgttttgtttagcaggtttcctctaatttgatttgtgaaggttttgat 26972691  T
Q  119 ggagttgtgtcagcaactaaattcgataagtttcttg 155  Q
    |||||| ||||  | || ||||||||||| |||||||    
T  26972690 ggagttatgtcgacgaccaaattcgataaatttcttg 26972654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 18594892 - 18594957
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgca 84  Q
    |||||||||| |||||||||||||| ||||| ||||||| ||||| ||| ||| | ||||||||||    
T  18594892 ggataaaatcttcaaggacagtgacaatgtcacgcctcaggttacataatagtattttgttttgca 18594957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 14433639 - 14433508
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgat 118  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||| |||||||||| ||||| |||||| | ||||||||||||||||||    
T  14433639 ggataaaatccacaaggacagtgactatgtcacgcctcaggttacataacagtgtattgttttgcaggtttcttctaatttaatttgtgaagattttgat 14433540  T
Q  119 ggagttgtgtcagcaactaaattcgataagtt 150  Q
    ||||   ||||  ||| |||||||||||||||    
T  14433539 ggagccatgtcgacaattaaattcgataagtt 14433508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 18739151 - 18739029
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatg 119  Q
    ||||||||||||||||||||||||||||||| |||||||       |  ||||| |||||||||| |||||| |||||   |||||||||| ||||||||    
T  18739151 ggataaaatcctcaaggacagtgactatgtcacgcctca-------agaagtgttttgttttgcaggtttcc-ctaattaaatttgtgaaggttttgatg 18739060  T
Q  120 gagttgtgtcagcaactaaattcgataagtt 150  Q
    |||| |||||  |||||||||||||||||||    
T  18739059 gagtcgtgtcgacaactaaattcgataagtt 18739029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 21189479 - 21189518
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  21189479 ggataaaatcctcaaggacagtgactatgtcacgcctcag 21189518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 2590580 - 2590617
Alignment:
Q  22 ataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  2590580 ataaaatcctcaaggacagtgactatgtcacgcctcag 2590617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 35969317 - 35969278
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  35969317 ggataaaatcttcaaggacagtgactatgtcacgcctcag 35969278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 19697885 - 19697762
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatg 119  Q
    |||||||||||||||||||| |||||||||| ||||||||| |       |||| |||||||||| |||||| |||||   |||||||||| ||||||||    
T  19697885 ggataaaatcctcaaggacaatgactatgtcacgcctcagtaa-------gtgttttgttttgcaggtttcccctaattaaatttgtgaaggttttgatg 19697793  T
Q  120 gagttgtgtcagcaactaaattcgataagtt 150  Q
    |||| |||||  |||||||||||||||||||    
T  19697792 gagtcgtgtcgacaactaaattcgataagtt 19697762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 15518094 - 15518197
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctct-aatctgatttgtgaagattttgat 118  Q
    ||||| |||||||||||| |||||||||||| || ||  |||||||||||||||||||||||||| ||||||| | |||  ||||||||||||||| |||    
T  15518094 ggatataatcctcaaggaaagtgactatgtcacgtctaggttacttaacagtgtgttgttttgcaggtttcctataaattagatttgtgaagatttcgat 15518193  T
Q  119 ggag 122  Q
    ||||    
T  15518194 ggag 15518197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 19976193 - 19976262
Alignment:
Q  86 gtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 155  Q
    |||| |||| || |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  19976193 gttttctcttatttgatttgtgaagattttgatggagttttgtcggcaacaaaattcgataagtttcttg 19976262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 6591808 - 6591757
Alignment:
Q  101 atttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttc 152  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  6591808 atttgtgaagattttgatggagctgtgtcggcaaccaaattcgataagtttc 6591757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 6591889 - 6591838
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacag 70  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  6591889 ggataaaatcctcaaggacagtgactacgtcacgcctcaggttacttaacag 6591838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 19973805 - 19973870
Alignment:
Q  86 gtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagttt 151  Q
    |||| |||| || |||||||  ||||||||||||||||| | || ||||| |||||||||||||||    
T  19973805 gttttctcttatttgatttggaaagattttgatggagttttctcggcaacaaaattcgataagttt 19973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 11634167 - 11634076
Alignment:
Q  59 gttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 150  Q
    ||||| |||||  ||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||| ||||  ||||||||||||||    
T  11634167 gttacataacaacgtgttgttttgcaggtttcctctaatttgatttgtgaagattttgatgaagctgtgtctgcaatcaaattcgataagtt 11634076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 127777 - 127816
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcag 59  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  127777 ggataaaatcctcaaggacagtgactatgtcacgcctcag 127816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 110198 - 110236
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctca 58  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  110198 ggataaaatcctcaaggacagtgactatgtcacgcctca 110236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 6800 - 6759
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcagtt 61  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  6800 ggataaaatcctcaatgacagtgactatgtcacgcctcagtt 6759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 82699 - 82822
Alignment:
Q  20 ggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatg 119  Q
    |||||||||||||||||| |||||||||||| ||||||||         ||||| ||| |||||| |||| ||| |||   |||||||||| ||||||||    
T  82699 ggataaaatcctcaaggatagtgactatgtcacgcctcag-------gaagtgttttgatttgcaggttttctcaaattaaatttgtgaaggttttgatg 82791  T
Q  120 gagttgtgtcagcaactaaattcgataagtt 150  Q
    || | |||||  ||||||||||||| |||||    
T  82792 gaatcgtgtcgacaactaaattcgacaagtt 82822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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