View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3273_low_91 (Length: 210)

Name: NF3273_low_91
Description: NF3273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3273_low_91
NF3273_low_91
[»] chr5 (3 HSPs)
chr5 (15-192)||(32267788-32267969)
chr5 (15-192)||(41889156-41889337)
chr5 (15-192)||(41901140-41901321)
[»] chr6 (5 HSPs)
chr6 (33-95)||(10579461-10579523)
chr6 (116-181)||(6596562-6596627)
chr6 (69-101)||(6602905-6602937)
chr6 (69-101)||(7119506-7119538)
chr6 (69-101)||(7131984-7132016)
[»] chr4 (2 HSPs)
chr4 (15-101)||(10634134-10634220)
chr4 (69-106)||(53761480-53761517)
[»] chr3 (1 HSPs)
chr3 (72-105)||(514421-514454)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 32267788 - 32267969
Alignment:
Q  15 aaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctta----gtaca 110  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    | |||    
T  32267788 aaaatccatcaaagatttagaactctctagactctttttcccaatacatgtgtgttccattttgatctcactaagtgaagggcagttcttaaggagaaca 32267887  T
Q  111 aagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaa 192  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32267888 aagaaggctgattctgtaagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaa 32267969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 41889337 - 41889156
Alignment:
Q  15 aaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctta----gtaca 110  Q
    ||||||||| ||||||||||| |||| |||||||| ||| | ||||||  ||||||||||||||||  ||| ||||||||| || ||||||    || ||    
T  41889337 aaaatccatcaaagatttagagctctttagactctattttccaatacacgtgtgttccattttgataacacaaagtgaaggacaattcttaagaagtgca 41889238  T
Q  111 aagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaa 192  Q
    ||||| |||||||||||||| || ||||||||| |||| ||||||||| |||||||| ||||||| ||||||| ||||||||    
T  41889237 aagaatgctgattctgtgagtatcgaacaatgattcaagtttatagataccaaatcaccaagaaatgaagacaactccacaa 41889156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 41901321 - 41901140
Alignment:
Q  15 aaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagttctt----agtaca 110  Q
    ||||| ||| |||||| |||||||||||||||||| ||||| ||||| | ||| |||||| ||||| |||| ||||||||| || ||| |    ||||||    
T  41901321 aaaattcatcaaagatctagaactctctagactctctttcccaatacctgtgtcttccatattgatatcaccaagtgaaggacaattcctaagaagtaca 41901222  T
Q  111 aagaaggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaagacatctccacaa 192  Q
    |||||||||||| | |||| ||| |  |||  || ||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  41901221 aagaaggctgataccgtgaccatcgggcaactagccaagtttatagataccaaatcaccaagaaacgaagacatctccacaa 41901140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 10579523 - 10579461
Alignment:
Q  33 agaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagg 95  Q
    |||| |||||| ||||||| ||||||||  | ||| ||||||||||||||||||||| |||||    
T  10579523 agaattctctacactctttgtccaaatagctgtgttttccattttgatctcactaagcgaagg 10579461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 6596627 - 6596562
Alignment:
Q  116 ggctgattctgtgagcattgaacaatgagtcaaatttatagattccaaatcaacaagaaacgaaga 181  Q
    |||||||||||||||| ||||||||||| | |  ||||||||  |||||||| |||||||| ||||    
T  6596627 ggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaacaaaga 6596562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 6602937 - 6602905
Alignment:
Q  69 ttccattttgatctcactaagtgaagggcagtt 101  Q
    ||||||||||||||||||||||||||| |||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtt 6602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 7119506 - 7119538
Alignment:
Q  69 ttccattttgatctcactaagtgaagggcagtt 101  Q
    ||||||||||| |||||||||||||||||||||    
T  7119506 ttccattttgaactcactaagtgaagggcagtt 7119538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 7131984 - 7132016
Alignment:
Q  69 ttccattttgatctcactaagtgaagggcagtt 101  Q
    ||||||||||| |||||||||||||||||||||    
T  7131984 ttccattttgaactcactaagtgaagggcagtt 7132016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 10634220 - 10634134
Alignment:
Q  15 aaaatccattaaagatttagaactctctagactctttttccaaatacatttgtgttccattttgatctcactaagtgaagggcagtt 101  Q
    ||||||| | ||||| |||||| |||| | | ||||||||| |||| |  ||  ||||||||||||||||||||||||||| |||||    
T  10634220 aaaatccctcaaagaattagaattctcgaaattctttttcccaatagacgtgcattccattttgatctcactaagtgaaggacagtt 10634134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 53761517 - 53761480
Alignment:
Q  69 ttccattttgatctcactaagtgaagggcagttcttag 106  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  53761517 ttccattttgatctcactaagtgaaggacagtttttag 53761480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 514454 - 514421
Alignment:
Q  72 cattttgatctcactaagtgaagggcagttctta 105  Q
    |||||||||||||||||||||||| |||||||||    
T  514454 cattttgatctcactaagtgaaggacagttctta 514421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University