View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3274_high_12 (Length: 240)
Name: NF3274_high_12
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3274_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 11192309 - 11192100
Alignment:
| Q |
10 |
agatgaactaaatactttctttgtgatgagggcatacagaatatataggcgcttcatgaccctcaaaagtatattgctttgcaccagtgactgcgtccca |
109 |
Q |
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| T |
11192309 |
agatgaactaaatactttctttgtgatgagggcatacagaatatataggcgcttcatgaccctcaaaagtatattgctttgcaccagtgactgcatccca |
11192210 |
T |
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| Q |
110 |
tgccttgatgaccctgttgtctccaaatgttacaacacaaagctgtttagaattattgtgatgtgatgcgacatatacggacatcatttgttgaaaaaat |
209 |
Q |
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| T |
11192209 |
tgccttgatgaccctgttgtctccaaatgttacaacacaaagctgtttagaattattgtgatgtgatgcgacatataaggacatcatttgctgaaaaaat |
11192110 |
T |
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| Q |
210 |
aattcactat |
219 |
Q |
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|||||||||| |
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| T |
11192109 |
aattcactat |
11192100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 47411512 - 47411602
Alignment:
| Q |
20 |
aatactttctttgtgatgagggcatacagaatatataggcgcttcatgaccctcaaaagtatattgctttgcaccagtgactgcgtcccat |
110 |
Q |
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| T |
47411512 |
aatattttctttgtgatgagggcatacagaatatacaggcgcttcatgaccctcaaaagtatattgctttgcaccagtgactgcatcccat |
47411602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 47411673 - 47411719
Alignment:
| Q |
112 |
ccttgatgaccctgttgtctccaaatgttacaacacaaagctgttta |
158 |
Q |
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| T |
47411673 |
ccttgatgaccctgtcctctccacatgttacaacacaaagctgttta |
47411719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 10308182 - 10308223
Alignment:
| Q |
158 |
agaattattgtgatgtgatgcgacatatacggacatcatttg |
199 |
Q |
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|||||| |||| ||||||||||||||||| |||||||||||| |
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| T |
10308182 |
agaattcttgtaatgtgatgcgacatataaggacatcatttg |
10308223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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