View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3274_high_2 (Length: 444)
Name: NF3274_high_2
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3274_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 429
Target Start/End: Complemental strand, 32063912 - 32063486
Alignment:
| Q |
8 |
cgaagaatatctgcaaccaaccttttccaaatgccatgtcagaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaagnnnnn |
107 |
Q |
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| T |
32063912 |
cgaagaaaatctgcaaccaaccttttccaaatgccatgtcagaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaagaaaaa |
32063813 |
T |
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| Q |
108 |
nngaagttatttttctaatgtttgtttagccctttattctctttcttatgaccattgtgttttatcaataaaaatcaaattttcttggtgttctttgatg |
207 |
Q |
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| T |
32063812 |
aagaagttatttttctaatgtttgtttagccatttattctctttcttatgaccattgtgttttatcaataaaaatcaaattttcttagtgttctttgatg |
32063713 |
T |
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| Q |
208 |
gattttcatcgaccttgagaatgaacgttgtgtcttagacatgcaattggaggggaggagacttaaaaattcaannnnnnnnatgttccatgaaatgctt |
307 |
Q |
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| T |
32063712 |
gattttcatcgaccttgagaatgaacgttgtgtcttagacatgcaattgaaggggaggagacttaaaaattcaattttttttatgttccatgaaatgctt |
32063613 |
T |
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| Q |
308 |
atatga-----nnnnnnnnnnnnnnnngttgcagaaaatagatactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttcgaga |
402 |
Q |
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| T |
32063612 |
atatgattttttttattttttatttttgttgcagaaaatagatactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttcgaga |
32063513 |
T |
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| Q |
403 |
atatggatgcaagaagagctggaaatg |
429 |
Q |
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| T |
32063512 |
atatggatgcaagaagagctggaaatg |
32063486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 49 - 281
Target Start/End: Complemental strand, 32071674 - 32071442
Alignment:
| Q |
49 |
gaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaagnnnnnnngaagttatttttctaatgtttgtttagccctttattctc |
148 |
Q |
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| T |
32071674 |
gaatttgatgtatttcaaactgagccatggaggctgccacgaggtttgtgaaaggaaaaaaatagttatttttctaatgttttcttagccctttattctc |
32071575 |
T |
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| Q |
149 |
tttcttatgaccattgtgttttatcaataaaaatcaaattttcttggtgttctttgatggattttcatcgaccttgagaatgaacgttgtgtcttagaca |
248 |
Q |
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| T |
32071574 |
tttcttatgaccattgtgttttatcaataaaaatcaaattttcctagtgttctttgatggattttcattaatcttgagaatgaacgttgtgtcttagaca |
32071475 |
T |
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| Q |
249 |
tgcaattggaggggaggagacttaaaaattcaa |
281 |
Q |
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| T |
32071474 |
tgcaattggaggggaggagacttaaaaattcaa |
32071442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 330 - 429
Target Start/End: Complemental strand, 32071228 - 32071129
Alignment:
| Q |
330 |
gttgcagaaaatagatactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttcgagaatatggatgcaagaagagctggaaatg |
429 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||| |
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| T |
32071228 |
gttgcagaaaataggtactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttccaaaatatggatgcaacaccagctggaaatg |
32071129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 355 - 429
Target Start/End: Complemental strand, 32050654 - 32050580
Alignment:
| Q |
355 |
agcataggaagtactatttctttgatctcaggaaccgtaggttcgagaatatggatgcaagaagagctggaaatg |
429 |
Q |
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| T |
32050654 |
agcatatgaggtactatttctttgatatcaggaaccgtaggttcgagaatatggatgcaagaagagctggaaatg |
32050580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 32050816 - 32050760
Alignment:
| Q |
134 |
tagccctttattctctttcttatgaccattgtgttttatcaataaaaatcaaatttt |
190 |
Q |
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| T |
32050816 |
tagccctttattctttttcttatgatcattgtgttttatcaataaaaatcaaatttt |
32050760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 32050904 - 32050820
Alignment:
| Q |
17 |
tctgcaaccaaccttttccaaatgccatgtcagaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaa |
101 |
Q |
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| T |
32050904 |
tctgtaaccaacctcttccaaatctcttgttagaatttgatgtatttcaaactgagccatggaagctgccaagaggtttgtgaaa |
32050820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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