View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3274_high_4 (Length: 328)

Name: NF3274_high_4
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3274_high_4
NF3274_high_4
[»] chr1 (20 HSPs)
chr1 (20-317)||(41834744-41835043)
chr1 (54-120)||(4552191-4552257)
chr1 (67-159)||(32815199-32815291)
chr1 (76-183)||(6790678-6790784)
chr1 (76-159)||(9301061-9301144)
chr1 (66-125)||(38902197-38902256)
chr1 (79-176)||(35365567-35365664)
chr1 (76-160)||(39668886-39668970)
chr1 (77-119)||(3527724-3527766)
chr1 (83-183)||(2574862-2574962)
chr1 (144-183)||(9632764-9632803)
chr1 (76-119)||(38675505-38675548)
chr1 (66-164)||(1750945-1751042)
chr1 (59-117)||(12047236-12047294)
chr1 (55-164)||(10553796-10553905)
chr1 (56-121)||(50564213-50564278)
chr1 (77-125)||(4044879-4044927)
chr1 (148-180)||(13208110-13208142)
chr1 (148-180)||(39829592-39829624)
chr1 (143-179)||(51049796-51049832)
[»] chr4 (17 HSPs)
chr4 (62-183)||(43361812-43361933)
chr4 (73-182)||(16530169-16530278)
chr4 (62-133)||(22575366-22575437)
chr4 (66-179)||(29927282-29927395)
chr4 (75-182)||(4066367-4066474)
chr4 (50-174)||(35798964-35799090)
chr4 (104-182)||(21111740-21111816)
chr4 (89-166)||(2914744-2914821)
chr4 (54-127)||(31500129-31500202)
chr4 (104-179)||(27359493-27359568)
chr4 (52-123)||(33335280-33335351)
chr4 (54-157)||(50783559-50783662)
chr4 (59-125)||(31377585-31377650)
chr4 (64-165)||(34236717-34236818)
chr4 (104-176)||(9093647-9093719)
chr4 (53-177)||(10097935-10098059)
chr4 (53-125)||(43771870-43771941)
[»] chr2 (16 HSPs)
chr2 (54-183)||(3636373-3636502)
chr2 (52-176)||(13530558-13530682)
chr2 (53-132)||(14812290-14812369)
chr2 (52-127)||(31633480-31633555)
chr2 (62-127)||(7670183-7670248)
chr2 (76-165)||(18375503-18375592)
chr2 (66-125)||(34375283-34375342)
chr2 (76-179)||(44273525-44273628)
chr2 (77-179)||(2854399-2854501)
chr2 (66-120)||(7271074-7271128)
chr2 (54-132)||(37331809-37331887)
chr2 (66-179)||(37743732-37743845)
chr2 (58-93)||(45213400-45213435)
chr2 (68-125)||(28713933-28713990)
chr2 (83-176)||(30531489-30531580)
chr2 (53-125)||(13490871-13490943)
[»] chr3 (14 HSPs)
chr3 (77-176)||(27213975-27214074)
chr3 (80-183)||(42225954-42226056)
chr3 (61-179)||(44455065-44455183)
chr3 (81-177)||(35044118-35044214)
chr3 (52-127)||(4541321-4541396)
chr3 (54-184)||(7753083-7753212)
chr3 (83-181)||(54259978-54260076)
chr3 (59-120)||(23629278-23629339)
chr3 (59-184)||(29373147-29373269)
chr3 (53-126)||(40241993-40242066)
chr3 (62-127)||(50888871-50888936)
chr3 (77-164)||(7613163-7613248)
chr3 (82-132)||(49746638-49746688)
chr3 (148-185)||(3432530-3432567)
[»] chr5 (17 HSPs)
chr5 (60-122)||(3135622-3135684)
chr5 (66-125)||(39180399-39180458)
chr5 (59-157)||(12382582-12382680)
chr5 (61-179)||(16054395-16054512)
chr5 (63-127)||(13138528-13138592)
chr5 (60-159)||(7248417-7248515)
chr5 (54-160)||(606698-606804)
chr5 (54-163)||(2054013-2054122)
chr5 (59-132)||(37936803-37936876)
chr5 (80-176)||(10803385-10803481)
chr5 (54-157)||(10106923-10107026)
chr5 (54-164)||(10911057-10911165)
chr5 (52-102)||(34211239-34211289)
chr5 (59-120)||(39351046-39351107)
chr5 (94-184)||(28995855-28995945)
chr5 (99-179)||(1088272-1088352)
chr5 (101-165)||(8713769-8713833)
[»] scaffold0172 (1 HSPs)
scaffold0172 (80-177)||(19412-19509)
[»] chr8 (12 HSPs)
chr8 (52-120)||(6471195-6471263)
chr8 (68-179)||(27134570-27134682)
chr8 (74-164)||(32967694-32967784)
chr8 (64-132)||(41909205-41909273)
chr8 (52-123)||(42446589-42446660)
chr8 (59-125)||(515141-515207)
chr8 (53-179)||(13177770-13177896)
chr8 (58-120)||(32028046-32028108)
chr8 (59-125)||(2072189-2072255)
chr8 (115-184)||(34086547-34086616)
chr8 (76-179)||(1090001-1090102)
chr8 (54-174)||(42409054-42409174)
[»] chr6 (3 HSPs)
chr6 (52-179)||(7984545-7984672)
chr6 (54-120)||(15064581-15064646)
chr6 (76-180)||(33193756-33193860)
[»] chr7 (14 HSPs)
chr7 (104-182)||(7723171-7723249)
chr7 (85-182)||(23803406-23803503)
chr7 (95-172)||(46515459-46515536)
chr7 (77-120)||(7712520-7712563)
chr7 (77-172)||(41141190-41141285)
chr7 (76-178)||(42161541-42161643)
chr7 (76-176)||(33878196-33878296)
chr7 (54-125)||(3181199-3181270)
chr7 (77-120)||(24316294-24316337)
chr7 (63-122)||(25634736-25634795)
chr7 (103-157)||(23466214-23466268)
chr7 (59-125)||(29414664-29414730)
chr7 (76-125)||(12810502-12810551)
chr7 (104-176)||(10624925-10624997)
[»] scaffold0065 (1 HSPs)
scaffold0065 (87-183)||(49112-49208)
[»] scaffold0129 (1 HSPs)
scaffold0129 (88-182)||(25852-25946)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 41834744 - 41835043
Alignment:
Q  20 tattaacaagtgttttgaggcattgcataaaaccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtattt 119  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41834744 tattaacaagtgttttgagccattgcttaaaaccaaaactagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtattt 41834843  T
Q  120 ttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataactgtaacatttattgaagaagattgaaacgaaggagc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41834844 ttaagatacaattacttataatgaattccttaaacaatgtccttagaatacttgttagcataactgtaacatttattgaagaatattgaaacgaaggagc 41834943  T
Q  220 cttgattgcgaagagtactagtagaat---gaagattcatgatcatttgctttaaatgatcggcaaaatgacagacctttgactaatcaaaatattttca 316  Q
    |||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41834944 cttgattgcgaagagtac-agtagaatgaagaagattcatgatcatttgctttaaatgatcggcaaaatgacagacctttgactaatcaaaatattttca 41835042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 4552257 - 4552191
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttt 120  Q
    ||||||||||||| ||||||||||||||||||| ||||  ||||||||| |||||||||||||||||    
T  4552257 aaaaatagtaattattacgttgaaaattgtgtagttatgtcttttatatttgtttgacttgtatttt 4552191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 32815199 - 32815291
Alignment:
Q  67 tttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgt 159  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||  ||| |  ||| ||| |||||||||||    
T  32815199 tttacattaaaaattatgtaattattacttttacatatgtttgacttgtatttttaagataaaatatctttttgtgagttctttaaacaatgt 32815291  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 6790678 - 6790784
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtt 175  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||  ||| | |||   ||||  |||||||||||||||||||||  | |||||||||     
T  6790678 aaaattgtgtaattattacttttttatatgtttgatttgtattttcgagacaaaatattttattttgaattccttaaacaatgtcc-caaaacacttgtc 6790776  T
Q  176 agcataac 183  Q
    ||||||||    
T  6790777 agcataac 6790784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 9301061 - 9301144
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgt 159  Q
    |||||||||||||||||||||||| || |||||||||| | |||||||| || |||| ||||||||| |||| ||||| |||||    
T  9301061 aaaattgtgtaattattacttttacatttgtttgacttatgtttttaaggtaaaatttcttataatggattctttaaataatgt 9301144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 38902197 - 38902256
Alignment:
Q  66 ttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  38902197 ttttacattgaaaattgtgtaattatgacttttatatatgtttgacttgaattttcaaga 38902256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 35365567 - 35365664
Alignment:
Q  79 attgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 176  Q
    ||||||||||||| || |||| ||||||||||||| |||||| |||||| |||| ||||| ||| ||| |||||||||| | |||||  |||||||||    
T  35365567 attgtgtaattatgacatttacatatgtttgacttatattttcaagatataatttcttattatggatttcttaaacaattttcttagggcacttgtta 35365664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 39668886 - 39668970
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtc 160  Q
    |||||||||||||||||| |||||||| | |||||||| ||||||||||  |||||| |||  |||  ||||| |||||||||||    
T  39668886 aaaattgtgtaattattatttttatatgtatttgacttatatttttaagtcacaatttctttcaatagattccataaacaatgtc 39668970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 3527724 - 3527766
Alignment:
Q  77 aaattgtgtaattattacttttatatatgtttgacttgtattt 119  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  3527724 aaattgtgtagttatgacttttatatatgtttgacttgtattt 3527766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 2574962 - 2574862
Alignment:
Q  83 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 182  Q
    |||||||||||| |||| || |||||||||| | ||||  | | |  ||| || |||||  |||||||||||||||| |||||| |||||||||||||||    
T  2574962 tgtaattattacatttacatgtgtttgacttatgttttcgaaaaaacatttctcataatagattccttaaacaatgttcttagagcacttgttagcataa 2574863  T
Q  183 c 183  Q
    |    
T  2574862 c 2574862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 9632764 - 9632803
Alignment:
Q  144 attccttaaacaatgtccttagaacacttgttagcataac 183  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  9632764 attccttaaacaatgtctttagaacatttgttagcataac 9632803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 38675548 - 38675505
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtattt 119  Q
    |||||||||||||||||| |||||||||||||||| || |||||    
T  38675548 aaaattgtgtaattattatttttatatatgtttgatttatattt 38675505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 1750945 - 1751042
Alignment:
Q  66 ttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtcctta 164  Q
    |||||| ||| ||||||| || |||| | ||||||||||||||||||| ||||||||| | | |||| ||||| ||   ||||||||||||| ||||||    
T  1750945 ttttacattggaaattgtatatttataatttttatatatgtttgacttatatttttaaaaaaaaatt-cttattataggttccttaaacaatatcctta 1751042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 12047236 - 12047294
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtat 117  Q
    ||||||||||||| |  ||||||||||| |||| ||||||| || ||||||||||||||    
T  12047236 tagtaatttttacatgaaaaattgtgtagttatgacttttacatgtgtttgacttgtat 12047294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 10553905 - 10553796
Alignment:
Q  55 aaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaac 154  Q
    |||||||||| ||||||| || ||||| ||||| ||| ||||| | || | ||| | |||||||||||||||| |||   || | ||| ||| |||||||    
T  10553905 aaaatagtaacttttacggtggaaattatgtaactatgactttaacatgtatttaatttgtatttttaagataaaatatttttttatggatttcttaaac 10553806  T
Q  155 aatgtcctta 164  Q
    ||||||||||    
T  10553805 aatgtcctta 10553796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 50564278 - 50564213
Alignment:
Q  56 aaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtattttt 121  Q
    ||||||||| |||||| || |||||| | || |||| ||||||| | |||||||||||||||||||    
T  50564278 aaatagtaacttttacattaaaaattatttacttatgacttttagagatgtttgacttgtattttt 50564213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 4044927 - 4044879
Alignment:
Q  77 aaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    ||||||| || |||| |||| ||||||||||||||||||||||| ||||    
T  4044927 aaattgtatagttatgacttgtatatatgtttgacttgtattttcaaga 4044879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 13208110 - 13208142
Alignment:
Q  148 cttaaacaatgtccttagaacacttgttagcat 180  Q
    |||||||||||||||||| ||||||||||||||    
T  13208110 cttaaacaatgtccttaggacacttgttagcat 13208142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 39829592 - 39829624
Alignment:
Q  148 cttaaacaatgtccttagaacacttgttagcat 180  Q
    |||||||||| ||||||||||||||||||||||    
T  39829592 cttaaacaatatccttagaacacttgttagcat 39829624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 51049832 - 51049796
Alignment:
Q  143 aattccttaaacaatgtccttagaacacttgttagca 179  Q
    |||||||||||||||  ||||||||||||||||||||    
T  51049832 aattccttaaacaatacccttagaacacttgttagca 51049796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 43361812 - 43361933
Alignment:
Q  62 taatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtcc 161  Q
    |||||||||| | |||| |||||||| ||||||||||| |  |||||||||| | ||||||||||| | || ||| ||||| |||||||||||||||| |    
T  43361812 taatttttacatagaaatttgtgtaagtattacttttaaacgtgtttgacttatgtttttaagataaagtttcttttaatggattccttaaacaatgttc 43361911  T
Q  162 ttagaacacttgttagcataac 183  Q
    |||| |||||||||||||||||    
T  43361912 ttaggacacttgttagcataac 43361933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 16530278 - 16530169
Alignment:
Q  73 ttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacactt 172  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||| |||||| ||  |   |||||||| | |||||||||||||||||   |||||    
T  16530278 ttgaaacttgtgtaattattacttttacatatgtttgacttatattttcaagataaaaaaaaaaataatgaaattcttaaacaatgtccttaatgcactt 16530179  T
Q  173 gttagcataa 182  Q
    ||||||||||    
T  16530178 gttagcataa 16530169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 22575437 - 22575366
Alignment:
Q  62 taatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaatta 133  Q
    |||||||||  ||||||||| ||||||||| ||||||| || |||||||||||||||||||||||| |||||    
T  22575437 taatttttatattgaaaattatgtaattatgacttttacatgtgtttgacttgtatttttaagataaaatta 22575366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 29927395 - 29927282
Alignment:
Q  66 ttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttag 165  Q
    |||||| ||||||||||| || |||| |||||||||| ||||||||||||||||  |||| | | || ||| |  || ||||||||||||||| ||||||    
T  29927395 ttttacattgaaaattgtatagttatgacttttatatgtgtttgacttgtatttccaagacaaagtttctttttgtggattccttaaacaatgcccttag 29927296  T
Q  166 aacacttgttagca 179  Q
      ||||||||||||    
T  29927295 ggcacttgttagca 29927282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 4066474 - 4066367
Alignment:
Q  75 gaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgt 174  Q
    |||| |||| ||||||||| ||| |  | |||||||||| | |||| |||||| |||| ||||||||| ||| |||||||||||||||||  ||| ||||    
T  4066474 gaaacttgtataattattagtttcacgtgtgtttgacttatgttttcaagatataatttcttataatggatttcttaaacaatgtccttaagacatttgt 4066375  T
Q  175 tagcataa 182  Q
    ||||||||    
T  4066374 tagcataa 4066367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 35799090 - 35798964
Alignment:
Q  50 aaccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgt--ttgacttgtatttttaagatacaattacttataatgaattc 147  Q
    |||||||| |||||||||||   | |||| || |||||||||||||||| || ||||  ||||| | |||||| || ||| |||| ||||||||| ||||    
T  35799090 aaccaaaagtagtaatttttgtatagaaacttttgtaattattacttttttacatgtgtttgacatatattttcaaaataaaatttcttataatggattc 35798991  T
Q  148 cttaaacaatgtccttagaacacttgt 174  Q
     ||||||||||  ||||||||||||||    
T  35798990 tttaaacaatgctcttagaacacttgt 35798964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 21111816 - 21111740
Alignment:
Q  104 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 182  Q
    |||||||||| |||||| |||||| |||| |||||||||||  |||||||||||||| ||||  || ||||||||||||    
T  21111816 tgtttgacttatattttcaagataaaatttcttataatgaa--ccttaaacaatgtctttagggcatttgttagcataa 21111740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 2914821 - 2914744
Alignment:
Q  89 tattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttaga 166  Q
    ||||||||||| || |||||||||| |  ||| |||||| ||||||| |||||| ||| ||||||||||| |||||||    
T  2914821 tattacttttacatgtgtttgacttatgctttcaagataaaattactaataatggatttcttaaacaatgcccttaga 2914744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 31500202 - 31500129
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagata 127  Q
    ||||||||||| |||||| |||| || ||| ||||||| | ||||| || |||||||||| |||||||||||||    
T  31500202 aaaaatagtaacttttacattgagaaatgtataattataatttttacatgtgtttgacttatatttttaagata 31500129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 27359568 - 27359493
Alignment:
Q  104 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagca 179  Q
    ||||||| |||||||||||||||| |||| ||| |  | | |||||||||| |||| | |||||||||||||||||    
T  27359568 tgtttgatttgtatttttaagataaaatttcttttcgtaagttccttaaacgatgttcgtagaacacttgttagca 27359493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 33335351 - 33335280
Alignment:
Q  52 ccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaa 123  Q
    |||||| ||||||||||||  |||||||||||||| |||| |  |||| || | ||||||||||||||||||    
T  33335351 ccaaaagtagtaatttttatattgaaaattgtgtagttatgatatttacatgtatttgacttgtatttttaa 33335280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 50783559 - 50783662
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaa 153  Q
    |||| |||||| |||||  | |||| |||||||||||||||||||| || |||||||||  | |||| |||||| |||| | ||||| || || ||||||    
T  50783559 aaaagtagtaacttttatatagaaacttgtgtaattattacttttacatgtgtttgactaatgttttcaagataaaatttcatataacgagtttcttaaa 50783658  T
Q  154 caat 157  Q
    ||||    
T  50783659 caat 50783662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 31377650 - 31377585
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    |||||| |||||| | ||||||||||||||||| || |||| || ||||||||||||||||| ||||    
T  31377650 tagtaacttttacatagaaaattgtgtaattatgac-tttacatgtgtttgacttgtattttcaaga 31377585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 34236818 - 34236717
Alignment:
Q  64 atttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtcctt 163  Q
    |||||||| ||| |||||||||| |||| | ||||| || | ||||| |||||||||||||| | |||| ||| |  ||  ||| |||||||||||||||    
T  34236818 atttttacattgcaaattgtgtagttatgatttttacatgtttttgaattgtatttttaagacaaaatttctttttgtgggttctttaaacaatgtcctt 34236719  T
Q  164 ag 165  Q
    ||    
T  34236718 ag 34236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 9093647 - 9093719
Alignment:
Q  104 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 176  Q
    |||||||||| |||||| |||  | |||| ||| | |||  ||||||||||||||||||||| ||||||||||    
T  9093647 tgtttgacttatattttcaaggcaaaatttctttttatgggttccttaaacaatgtccttaggacacttgtta 9093719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 10097935 - 10098059
Alignment:
Q  53 caaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaa 152  Q
    |||||| |||||||||||  ||||||||||| || |||| ||||||| || | |||| ||| |||||| |||| | |||| ||  |  || |||||||||    
T  10097935 caaaaacagtaatttttatattgaaaattgtatagttatgacttttacatgtatttgccttatattttcaagacaaaatttctctttgtggattccttaa 10098034  T
Q  153 acaatgtccttagaacacttgttag 177  Q
    ||||| |  |||| |||||||||||    
T  10098035 acaatatttttaggacacttgttag 10098059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 43771941 - 43771870
Alignment:
Q  53 caaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    ||||| ||||||||||||| ||| || ||||| | |||| ||||| | || ||||||||||||||||||||||    
T  43771941 caaaagtagtaatttttacattgtaa-ttgtgcagttatgactttaacatgtgtttgacttgtatttttaaga 43771870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 3636502 - 3636373
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaa 153  Q
    |||| |||||| |||||| | |||| || ||||||||||||||||| || |||||||||| | | || |||||| |||| ||||||||  ||||||||||    
T  3636502 aaaagtagtaacttttacctagaaacttctgtaattattacttttacatttgtttgacttatgtgttcaagataaaatttcttataatagattccttaaa 3636403  T
Q  154 caatgtccttagaacacttgttagcataac 183  Q
    ||||| ||||||  ||||||||||||||||    
T  3636402 caatgcccttagggcacttgttagcataac 3636373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 13530558 - 13530682
Alignment:
Q  52 ccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattcctta 151  Q
    |||||| ||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |||| | | ||  || |  || |||||||     
T  13530558 ccaaaattagtagtttttactttgaaaattgtgtaattatgacttgtatatatgtttgacttgtattttcaagacaaactttttttttgtggattccttt 13530657  T
Q  152 aacaatgtccttagaacacttgtta 176  Q
    |||||||||||||  ||||||||||    
T  13530658 aacaatgtccttaagacacttgtta 13530682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 14812290 - 14812369
Alignment:
Q  53 caaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaatt 132  Q
    ||||| || ||| |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||    
T  14812290 caaaagtattaacttttacattgaaaattgtgtaattataacttttacatatgtttgacttgtattttcaagataaaatt 14812369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 31633480 - 31633555
Alignment:
Q  52 ccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagata 127  Q
    |||||| ||||||||||||| ||| |||||||||| ||||  |||||| |||||||||||||||||||| ||||||    
T  31633480 ccaaaattagtaatttttacattggaaattgtgtagttatgccttttacatatgtttgacttgtattttcaagata 31633555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 7670248 - 7670183
Alignment:
Q  62 taatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagata 127  Q
    |||| ||||| ||||||||||| ||||||| ||||||  |||||||||||||||||||||||||||    
T  7670248 taatatttacattgaaaattgtataattatgacttttccatatgtttgacttgtatttttaagata 7670183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 18375503 - 18375592
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttag 165  Q
    |||||| |||||||||||||||||| |||| ||||||| ||||||||||||| |  | ||||||||  | ||||||||||||| ||||||    
T  18375503 aaaattatgtaattattacttttatgtatgcttgacttatatttttaagataaatattcttataatagaatccttaaacaatgaccttag 18375592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 34375342 - 34375283
Alignment:
Q  66 ttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    |||||| ||||| ||||||||||||| || ||||||||||||||||||||||||| ||||    
T  34375342 ttttacattgaatattgtgtaattatgacatttatatatgtttgacttgtattttcaaga 34375283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 44273525 - 44273628
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtt 175  Q
    |||||||||||||| | | ||| | ||||||||||||||||||||||| ||| |||| ||| | |||||||  ||||||||| |  ||| ||||||||||    
T  44273525 aaaattgtgtaattgtcattttaacatatgtttgacttgtatttttaatataaaatttctttttatgaatttattaaacaatatatttaaaacacttgtt 44273624  T
Q  176 agca 179  Q
    ||||    
T  44273625 agca 44273628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 2854399 - 2854501
Alignment:
Q  77 aaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 176  Q
    |||||||||| |||| ||||||| |||||||| ||||||||||| |||| | |||| |||    || ||||||||||| ||| ||||||  |||||||||    
T  2854399 aaattgtgtagttatgacttttagatatgtttaacttgtattttcaagacaaaatttctttatgtggattccttaaacgatgcccttagggcacttgtta 2854498  T
Q  177 gca 179  Q
    |||    
T  2854499 gca 2854501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 7271074 - 7271128
Alignment:
Q  66 ttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttt 120  Q
    |||||| ||| ||||||||||||||| | |||||||||||||| |||||||||||    
T  7271074 ttttacattggaaattgtgtaattatgaattttatatatgtttaacttgtatttt 7271128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 37331887 - 37331809
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaatt 132  Q
    |||| |||||||||||   |||| |||||||||||||| | ||| |||||| |||||||| ||||||||||||| ||||    
T  37331887 aaaagtagtaatttttgtattgacaattgtgtaattatgattttaatatatatttgacttatatttttaagataaaatt 37331809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 37743732 - 37743845
Alignment:
Q  66 ttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttag 165  Q
    |||||| || ||||||||| | |||| |||||||||||||||| |||||||||||  | | | |||| ||| | |||||||  |||||||||   ||| |    
T  37743732 ttttacattaaaaattgtgcagttataacttttatatatgtttaacttgtattttcgaaacaaaatttcttttgatgaattttttaaacaatactcttgg 37743831  T
Q  166 aacacttgttagca 179  Q
    ||||||||||||||    
T  37743832 aacacttgttagca 37743845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 45213400 - 45213435
Alignment:
Q  58 atagtaatttttacgttgaaaattgtgtaattatta 93  Q
    ||||||||| ||||||||||||||||||||||||||    
T  45213400 atagtaattattacgttgaaaattgtgtaattatta 45213435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 28713933 - 28713990
Alignment:
Q  68 ttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    |||| ||||||||||| ||||||||||||||| |||  ||| ||||||||||| ||||    
T  28713933 ttacattgaaaattgtataattattacttttacataattttaacttgtattttcaaga 28713990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 30531580 - 30531489
Alignment:
Q  83 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 176  Q
    ||||||||||| |||||||| |||||||||| || |||||||||| || |  |||| || |||| |||||||||| || |||||||| ||||||    
T  30531580 tgtaattattatttttatatctgtttgacttata-ttttaagataaaact-tttattataaatttcttaaacaatatctttagaacatttgtta 30531489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 13490943 - 13490871
Alignment:
Q  53 caaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    ||||||||||||||||||  ||||||||||| || |||| | ||||| || |||||| ||| |||||| ||||    
T  13490943 caaaaatagtaatttttatattgaaaattgtatagttatgatttttacatgtgtttgccttatattttcaaga 13490871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 27213975 - 27214074
Alignment:
Q  77 aaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 176  Q
    ||||||| || |||| ||||||| ||||||||||||||||||||||||| | | || ||| |  ||  ||||||||||||||||||||||||||||||||    
T  27213975 aaattgtatagttatgacttttacatatgtttgacttgtatttttaagacaaagtttctttttgtgtgttccttaaacaatgtccttagaacacttgtta 27214074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 42226056 - 42225954
Alignment:
Q  80 ttgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagca 179  Q
    ||||||||| |||||||||| ||||||| || || | |||| |||||| |||| ||||||||  ||||||||||||||||| |||| |||||||||||||    
T  42226056 ttgtgtaat-attacttttaaatatgttagatttatgttttcaagataaaatttcttataatagattccttaaacaatgtctttaggacacttgttagca 42225958  T
Q  180 taac 183  Q
    ||||    
T  42225957 taac 42225954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 44455183 - 44455065
Alignment:
Q  61 gtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtc 160  Q
    |||| |||||| ||||||||||| || |||| |||||||| | ||||||||||||||||| |||| | |||| |||    ||| || ||||||||| |||    
T  44455183 gtaaattttacattgaaaattgtatagttatgacttttatgtgtgtttgacttgtattttcaagacaaaatttctttctgtgagtttcttaaacaacgtc 44455084  T
Q  161 cttagaacacttgttagca 179  Q
    |||||||||||||||||||    
T  44455083 cttagaacacttgttagca 44455065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 35044118 - 35044214
Alignment:
Q  81 tgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttag 177  Q
    ||||||||||||||||| | || ||||||||||   |||| |||||| |||| ||||||||| ||| ||||||||||| ||||||  ||||||||||    
T  35044118 tgtgtaattattactttcacatgtgtttgacttaggttttcaagataaaatttcttataatggatttcttaaacaatgcccttagggcacttgttag 35044214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 4541321 - 4541396
Alignment:
Q  52 ccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagata 127  Q
    |||||| ||||||||||||  |||| |||| ||||||||| ||||||| |||| ||||||||||||||| ||||||    
T  4541321 ccaaaattagtaatttttatattgagaattttgtaattataacttttacatatctttgacttgtattttcaagata 4541396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 7753083 - 7753212
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaa 153  Q
    |||||||||||||||  | | |||| || |||||||||||||||||||| ||||||| || | |||| |||||| || |  || || || ||||||||||    
T  7753083 aaaaatagtaattttg-catagaaatttatgtaattattacttttatatgtgtttgatttatgttttcaagataaaactttttttattggattccttaaa 7753181  T
Q  154 caatgtccttagaacacttgttagcataact 184  Q
    ||||  |||||  ||||||||||||||||||    
T  7753182 caatacccttaagacacttgttagcataact 7753212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 54259978 - 54260076
Alignment:
Q  83 tgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcata 181  Q
    ||||||||||||||||| |   ||||||||| |||||| |||||| ||||  |||||||   || ||||||||||||| ||||||||||| ||| ||||    
T  54259978 tgtaattattacttttacactcgtttgacttatattttcaagataaaattttttataataggtttcttaaacaatgtctttagaacactttttaacata 54260076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 23629278 - 23629339
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttt 120  Q
    |||||| |||||| ||||||||||| ||||||| ||||||| || ||||||| |||||||||    
T  23629278 tagtaacttttacattgaaaattgtataattatgacttttacatgtgtttgatttgtatttt 23629339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 29373147 - 29373269
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatg 158  Q
    |||||| |||||| ||||||||  | ||||||| ||||||||||  ||||||||||||||||||||| | | || ||| | | || ||||||||||||||    
T  29373147 tagtaacttttacattgaaaata-tataattatgacttttatatgcgtttgacttgtatttttaagaca-attttcttttga-gagttccttaaacaatg 29373243  T
Q  159 tccttagaacacttgttagcataact 184  Q
    ||||| ||| | ||||||||| ||||    
T  29373244 tccttggaaaatttgttagcaaaact 29373269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 40241993 - 40242066
Alignment:
Q  53 caaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagat 126  Q
    ||||| ||||||||||||| | |||||||||||| ||||  |||||| || || || |||||||||||||||||    
T  40241993 caaaagtagtaatttttacatggaaaattgtgtagttatgccttttacatgtgcttaacttgtatttttaagat 40242066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 50888936 - 50888871
Alignment:
Q  62 taatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagata 127  Q
    |||||||||  || ||||||||||| |||| ||||||| || |||||||||||||||| |||||||    
T  50888936 taatttttatattaaaaattgtgtagttataacttttacatgtgtttgacttgtatttctaagata 50888871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 7613248 - 7613163
Alignment:
Q  77 aaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtcctta 164  Q
    ||||| ||||||||| | ||||| ||||| ||||||| ||||||||||| | |||| ||  | |||| ||||||||||||||||||||    
T  7613248 aaattatgtaattatgatttttacatatgattgacttatatttttaagacaaaatttct--ttatgagttccttaaacaatgtcctta 7613163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 49746638 - 49746688
Alignment:
Q  82 gtgtaattattacttttatatatgtttgacttgtatttttaagatacaatt 132  Q
    |||||||||||| |||||| |||||||||||| || |||||||||| ||||    
T  49746638 gtgtaattattatttttatttatgtttgacttatacttttaagataaaatt 49746688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 3432530 - 3432567
Alignment:
Q  148 cttaaacaatgtccttagaacacttgttagcataactg 185  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  3432530 cttaaagaatgttcttagaacacttgttagcataactg 3432567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 3135622 - 3135684
Alignment:
Q  60 agtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtattttta 122  Q
    |||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  3135622 agtaatttttacattaaaaattgtgtagttatgacttttatatatgtttgacttgtattttta 3135684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 39180458 - 39180399
Alignment:
Q  66 ttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  39180458 ttttaccttggaaattgtgtaattataacttttatatatgtttgacttgtattttcaaga 39180399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 12382680 - 12382582
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaat 157  Q
    |||||| |||||| ||||||||||| |  |||| |||||||||||||||||||||||||||||| |||| | || ||||| ||   |||||||||||||    
T  12382680 tagtaacttttacattgaaaattgtatgtttatgacttttatatatgtttgacttgtatttttatgataaagtttcttattatatgttccttaaacaat 12382582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 16054395 - 16054512
Alignment:
Q  61 gtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtc 160  Q
    |||| |||||| ||||||||| |||| |||| |||||||||| ||||||||||||||||| || | | |||| ||| |  ||  || |||||||||||||    
T  16054395 gtaacttttacattgaaaattatgta-ttatgacttttatatgtgtttgacttgtattttaaaaacaaaatttctttttgtgggtttcttaaacaatgtc 16054493  T
Q  161 cttagaacacttgttagca 179  Q
    ||||| |||||||||||||    
T  16054494 cttaggacacttgttagca 16054512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 13138528 - 13138592
Alignment:
Q  63 aatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagata 127  Q
    ||||||||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||| ||||||    
T  13138528 aatttttacattggaaattatgtaattatgacttttatatgtgtttgacttgtattttcaagata 13138592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 7248515 - 7248417
Alignment:
Q  60 agtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgt 159  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||| |||| | |||  ||| | |||| | |||||||||||||    
T  7248515 agtaacttttacgttgaaagttgagtaattattacttttatat-tgtttgatttgtattttcaagacaaaatatctttttatgagtaccttaaacaatgt 7248417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 606698 - 606804
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaa 153  Q
    |||||||| ||||||||| ||| |||||||    |||||||||| ||| || ||||| || ||||||| ||||| |||| ||| | ||||||||||||||    
T  606698 aaaaatagcaatttttacattggaaattgtacctttattactttaataaatatttgatttatatttttgagatataatttctttttatgaattccttaaa 606797  T
Q  154 caatgtc 160  Q
    |||||||    
T  606798 caatgtc 606804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 2054122 - 2054013
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaa 153  Q
    |||| |||| |||||||| |||||||||||| | |||| ||||||| || ||||| |||| |||| |   |||| |||| ||| |||||| |||||||||    
T  2054122 aaaagtagtcatttttacattgaaaattgtgcagttatgacttttacatgtgtttaacttctattctcttgataaaatttcttttaatgagttccttaaa 2054023  T
Q  154 caatgtcctt 163  Q
    ||||||||||    
T  2054022 caatgtcctt 2054013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 37936803 - 37936876
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaatt 132  Q
    ||||||||||||| ||||| ||||||||||||| ||||||  |||||||||||||| ||||  |||||| ||||    
T  37936803 tagtaatttttactttgaatattgtgtaattatgactttttcatatgtttgacttgcatttccaagataaaatt 37936876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 10803481 - 10803385
Alignment:
Q  80 ttgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 176  Q
    ||||||||||||||||| |||| |||||||| || | |||| |||||| |||| || ||||| |||| |||||||||| | |||||  |||||||||    
T  10803481 ttgtgtaattattacttatatacatgtttgatttatgttttcaagataaaatttctcataataaatttcttaaacaatattcttaggtcacttgtta 10803385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 10106923 - 10107026
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaa 153  Q
    |||||| ||| ||||||| | ||||| |||||| |||| ||||||| |||| |||| |||||||||| |||||| |||| ||| ||||   |||||||||    
T  10106923 aaaaatggtattttttacatagaaaaatgtgtagttatgacttttacatatctttggcttgtattttcaagataaaatttcttttaatagcttccttaaa 10107022  T
Q  154 caat 157  Q
    ||||    
T  10107023 caat 10107026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 10911057 - 10911165
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaa 153  Q
    |||| ||||| ||||||  |||| |||||||||||||| ||||||||||||||||  |||||||||| |||||| | || ||| | |||  || ||||||    
T  10911057 aaaattagtagtttttatcttgagaattgtgtaattatgacttttatatatgttt--cttgtattttcaagataaactttctttttatgtgttacttaaa 10911154  T
Q  154 caatgtcctta 164  Q
    |||| ||||||    
T  10911155 caatatcctta 10911165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 34211239 - 34211289
Alignment:
Q  52 ccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatat 102  Q
    |||||||| ||||||||||| |||||||||||||| |||| ||||||||||    
T  34211239 ccaaaaattgtaatttttacattgaaaattgtgtagttatgacttttatat 34211289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 39351046 - 39351107
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttt 120  Q
    ||||||||||||| ||  ||||||| ||||||| ||||||| || |||||||||||||||||    
T  39351046 tagtaatttttacattagaaattgtataattatgacttttagatgtgtttgacttgtatttt 39351107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 28995855 - 28995945
Alignment:
Q  94 cttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataact 184  Q
    |||||| || |||||| ||| | ||||||||||| |||| ||| ||||| ||| |||||| |||||  |||  ||||||||||||||||||    
T  28995855 cttttacatgtgtttgccttatgtttttaagataaaatttcttttaatggatttcttaaataatgttattatgacacttgttagcataact 28995945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 1088272 - 1088352
Alignment:
Q  99 atatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagca 179  Q
    |||||||||| |||| ||||||||||||| |||| ||| |  ||  ||||||||||||||  |||||| || |||||||||    
T  1088272 atatatgtttaacttatatttttaagatataatttctttttgtgggttccttaaacaatgcacttagagcatttgttagca 1088352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 8713833 - 8713769
Alignment:
Q  101 atatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttag 165  Q
    |||||||||||||||||||| |||| | ||||  || ||||| ||| |||||||||| |||||||    
T  8713833 atatgtttgacttgtattttcaagacaaaattttttttaatggatttcttaaacaatatccttag 8713769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 19509 - 19412
Alignment:
Q  80 ttgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttag 177  Q
    |||||||||||||||||||| || |||||||||| | |||| |||||| |||| |||  | || | |||||||||||||||||||| |||||||||||    
T  19509 ttgtgtaattattacttttacatgtgtttgacttatgttttcaagataaaatttcttggagtggaatccttaaacaatgtccttaggacacttgttag 19412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 6471263 - 6471195
Alignment:
Q  52 ccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttt 120  Q
    |||||| ||||| ||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  6471263 ccaaaattagtagtttttatcttggaaattgtataattattacttttatatatgtttgacttgtatttt 6471195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 27134570 - 27134682
Alignment:
Q  68 ttacgttgaaaattgtgtaattattacttttatatatgtttga-cttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttaga 166  Q
    |||| |||||||||||||| |||| ||||||| || ||||| | |||||| |||||||||| |||| ||| |  | | |||||||||||||||| ||||     
T  27134570 ttacattgaaaattgtgtagttataacttttaaatgtgttttaacttgtacttttaagataaaatttctttttgtaagttccttaaacaatgtctttagg 27134669  T
Q  167 acacttgttagca 179  Q
    |||||||||||||    
T  27134670 acacttgttagca 27134682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 32967784 - 32967694
Alignment:
Q  74 tgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtcctta 164  Q
    |||||||||| || |||| | ||||| ||  |||||||||||||||| |||||| |||| ||  | |||||||||||||||||||||||||    
T  32967784 tgaaaattgtatagttatgatttttacatgagtttgacttgtattttgaagataaaatttctctttatgaattccttaaacaatgtcctta 32967694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 41909273 - 41909205
Alignment:
Q  64 atttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaatt 132  Q
    |||||||| || |||||||| || |||| ||||||| |||||||| |||||||||||||||||| ||||    
T  41909273 atttttacattaaaaattgtatagttatgacttttagatatgtttaacttgtatttttaagatagaatt 41909205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 42446660 - 42446589
Alignment:
Q  52 ccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaa 123  Q
    |||||||| ||||||||||  |||||||||||||| |||| ||||||| |||| ||| |||| |||||||||    
T  42446660 ccaaaaattgtaatttttatattgaaaattgtgtagttataacttttacatatatttaacttatatttttaa 42446589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 515141 - 515207
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    ||||||||||||  ||| |||||||||| |||| ||||||| |||| ||||||||||||||| ||||    
T  515141 tagtaatttttaaattggaaattgtgtagttatgacttttacatatatttgacttgtattttcaaga 515207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 13177770 - 13177896
Alignment:
Q  53 caaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaa 152  Q
    ||||| |||||| |||||  ||| ||||| |||| |||| ||||||| || ||||||||||||||||| |||| | | || ||| |     |||||||||    
T  13177770 caaaagtagtaacttttatattggaaattatgtagttatgacttttacatgtgtttgacttgtattttcaagacaaactttctttttgaagattccttaa 13177869  T
Q  153 acaatgtccttagaacacttgttagca 179  Q
    |||||| |||||| |||||||||||||    
T  13177870 acaatgcccttaggacacttgttagca 13177896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 32028046 - 32028108
Alignment:
Q  58 atagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttt 120  Q
    ||||||| |||||| ||||||||||| ||||||| | |||||||| | |||||||||||||||    
T  32028046 atagtaacttttacattgaaaattgtataattataatttttatatgtatttgacttgtatttt 32028108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 2072189 - 2072255
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    |||||| |||||  || ||||||||||| |||| |||||||||| ||||||| ||||||||| ||||    
T  2072189 tagtaacttttatattaaaaattgtgtagttataacttttatatgtgtttgatttgtattttcaaga 2072255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 34086616 - 34086547
Alignment:
Q  115 tatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataact 184  Q
    |||||| |||||  |||| ||||||||||||||||||||||||    ||||| ||||| |||||||||||    
T  34086616 tattttcaagatcaaatttcttataatgaattccttaaacaatccatttagagcacttattagcataact 34086547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 1090102 - 1090001
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtt 175  Q
    |||||| |||| |||| |||||||| |  |||||||||||||||| |||| | |||| ||| |  ||  |||||||||||||| ||||| ||||||| ||    
T  1090102 aaaattatgtagttatgacttttatgt--gtttgacttgtattttcaagacaaaattcctttttgtgggttccttaaacaatgcccttaaaacacttttt 1090005  T
Q  176 agca 179  Q
    ||||    
T  1090004 agca 1090001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 42409174 - 42409054
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaa 153  Q
    |||| ||||||||||| | | |||| || | ||||||||||||||| || | |||||||| | |||| |||||| | ||  || ||||| ||||||||||    
T  42409174 aaaagtagtaatttttgcatagaaacttatataattattacttttacatgtatttgacttatgttttcaagataaagttttttttaatggattccttaaa 42409075  T
Q  154 caatgtccttagaacacttgt 174  Q
    ||||  ||||||  |||||||    
T  42409074 caatacccttagggcacttgt 42409054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 7984672 - 7984545
Alignment:
Q  52 ccaaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattcctta 151  Q
    |||||| ||| || |||||| ||||||||| |||| |||| ||||||| || ||||||||||||||||| |||| | | || ||| |  ||  ||| |||    
T  7984672 ccaaaagtagcaaattttacattgaaaattttgtagttatgacttttacatgtgtttgacttgtattttcaagacaaagtttctttttgtgggttcatta 7984573  T
Q  152 aacaatgtccttagaacacttgttagca 179  Q
    ||||||||||| ||||||||||||||||    
T  7984572 aacaatgtcctcagaacacttgttagca 7984545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 15064646 - 15064581
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttt 120  Q
    |||| |||||| |||||  |||||||||||||| |||| | ||||| ||||||||||||||||||||    
T  15064646 aaaagtagtaacttttatattgaaaattgtgtatttatga-ttttacatatgtttgacttgtatttt 15064581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 33193860 - 33193756
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtt 175  Q
    ||||||||||| |||||||||||| |  ||||  |||| ||||||||||||| |||| ||| | ||  |||| ||||||||| |  ||||  ||||||||    
T  33193860 aaaattgtgtatttattacttttacaagtgttatacttatatttttaagataaaatttctttttatttattcattaaacaatattattagggcacttgtt 33193761  T
Q  176 agcat 180  Q
    |||||    
T  33193760 agcat 33193756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 7723171 - 7723249
Alignment:
Q  104 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 182  Q
    |||||||||| ||||||||||||| |||| ||||| ||||||| |||||||||||   |||||| ||||||||||||||    
T  7723171 tgtttgacttatatttttaagataaaatttcttatgatgaatttcttaaacaatgcatttagaaaacttgttagcataa 7723249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 23803406 - 23803503
Alignment:
Q  85 taattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 182  Q
    ||||||||||||||| || |||||||||| || |||||||||| |||| ||||||||  ||||||| ||||||   |||| ||||||||||| |||||    
T  23803406 taattattacttttaaatgtgtttgacttataattttaagataaaatttcttataatagattccttgaacaatactcttaaaacacttgttaacataa 23803503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 46515536 - 46515459
Alignment:
Q  95 ttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacactt 172  Q
    |||||||| |||||||||||||||||||| |||  ||| ||| | |||| ||| ||||||||||||||||| ||||||    
T  46515536 ttttatatgtgtttgacttgtatttttaaaataatatttctttttatgagttctttaaacaatgtccttaggacactt 46515459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 7712563 - 7712520
Alignment:
Q  77 aaattgtgtaattattacttttatatatgtttgacttgtatttt 120  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  7712563 aaattgtgtaattatcacttttatatttgtttgacttgtatttt 7712520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 41141285 - 41141190
Alignment:
Q  77 aaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacactt 172  Q
    |||||||||| || | | |||||||| ||||| ||||||||||| |||||| || | ||||| ||   |||||||||||||||| |||||||||||    
T  41141285 aaattgtgtagttgtgatttttatatgtgtttcacttgtattttcaagataaaactccttattataggttccttaaacaatgtcattagaacactt 41141190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 42161541 - 42161643
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagataca-attacttataatgaattccttaaacaatgtccttagaacacttgt 174  Q
    |||||| |||| |||| ||||| |||||||||||| |||||||||||||||| |  || ||| | || | |||||||||||||||| || ||||||||||    
T  42161541 aaaattatgtagttatgactttcatatatgtttgatttgtatttttaagataaatttttcttgt-ataagttccttaaacaatgtctttcgaacacttgt 42161639  T
Q  175 tagc 178  Q
    ||||    
T  42161640 tagc 42161643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 33878196 - 33878296
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtt 175  Q
    ||||||||||| |||| ||||||| |||||||||| ||||||||||| |||| | ||  || |  ||| |||||||||||||  || || ||||||||||    
T  33878196 aaaattgtgtagttatgacttttacatatgtttgatttgtatttttaggataaattttttttttctgagttccttaaacaatacccctaaaacacttgtt 33878295  T
Q  176 a 176  Q
    |    
T  33878296 a 33878296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 3181199 - 3181270
Alignment:
Q  54 aaaaatagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    |||| ||||||||||||| |||||||||||| | |||| | ||||| | || ||||||||||||||| ||||    
T  3181199 aaaagtagtaatttttacattgaaaattgtgcagttatcatttttacaaatatttgacttgtattttcaaga 3181270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 24316337 - 24316294
Alignment:
Q  77 aaattgtgtaattattacttttatatatgtttgacttgtatttt 120  Q
    ||||||||||||||| ||||||||| || |||||||||||||||    
T  24316337 aaattgtgtaattataacttttatacatatttgacttgtatttt 24316294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 25634736 - 25634795
Alignment:
Q  63 aatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtattttta 122  Q
    ||||| || |||| |||||||||| |||| | ||||| ||||||||||||||||||||||    
T  25634736 aatttctatgttggaaattgtgtagttatcatttttacatatgtttgacttgtattttta 25634795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 23466268 - 23466214
Alignment:
Q  103 atgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaat 157  Q
    ||||||||||| |||||| || |||||||| |||| |||| ||||||||||||||    
T  23466268 atgtttgacttatattttcaatatacaatttcttacaatggattccttaaacaat 23466214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 29414730 - 29414664
Alignment:
Q  59 tagtaatttttacgttgaaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    ||||||||||||| ||||||||||| ||  ||| ||||||| || | ||||||||||||||| ||||    
T  29414730 tagtaatttttacattgaaaattgtataggtatgacttttacatgtatttgacttgtattttcaaga 29414664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 12810502 - 12810551
Alignment:
Q  76 aaaattgtgtaattattacttttatatatgtttgacttgtatttttaaga 125  Q
    ||||| ||||| |||| |||||||||| ||||||||||||||||| ||||    
T  12810502 aaaatcgtgtatttataacttttatatgtgtttgacttgtattttcaaga 12810551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 10624997 - 10624925
Alignment:
Q  104 tgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgtta 176  Q
    ||||||||||||||||| |||| | |||| ||| |  ||  ||| |||||||||| |||||||||||||||||    
T  10624997 tgtttgacttgtattttcaagacataatttctttttgtgggttctttaaacaatgcccttagaacacttgtta 10624925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 49112 - 49208
Alignment:
Q  87 attattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataac 183  Q
    ||||||||||||| || | |||||||| | |||||||||||  ||| ||||||||| ||||||||||||||| | ||||| |||||| ||| |||||    
T  49112 attattacttttacatgtatttgacttatgtttttaagataacatttcttataatggattccttaaacaatgcctttagagcacttgctagtataac 49208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 25852 - 25946
Alignment:
Q  88 ttattacttttatatatgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaacacttgttagcataa 182  Q
    |||||| |||||||| |||||||||| | ||||||||||| ||  | |||||||| |||||||||||||| || |||  ||| ||||||| ||||    
T  25852 ttattatttttatatttgtttgacttatgtttttaagataaaaaaaattataatggattccttaaacaatatcattaagacatttgttagtataa 25946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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