View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3274_high_9 (Length: 248)
Name: NF3274_high_9
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3274_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14726950 - 14726719
Alignment:
| Q |
1 |
ttatcctagtggggggttcgattgactgtgcagtttgtgtggggaagatggaaacatcagtgcttctgtttcttcactgcaagtttgcagcaatggtttg |
100 |
Q |
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| T |
14726950 |
ttatcctagtggggggttcgattgactgtggagtttgtgtggggaaggtggaaacatcagtgcttctgtttcttcactgcaagtttgcagcaatggtttg |
14726851 |
T |
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| Q |
101 |
gtttagtgtgtttcagaggctttggttgtttttggtgttgccaccaaatttttctgtccactttgaatgtttgagtggggctgcgcgatgtaagccatta |
200 |
Q |
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| T |
14726850 |
gtttagtgtgtttcagtggctttggttatttttggtgttgccaccaaatttttctgtccactttgaatgttttagtggggctgcgtgatgtaagccatta |
14726751 |
T |
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| Q |
201 |
aggaaagttttttggttaatttggcatacaac |
232 |
Q |
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| T |
14726750 |
aggaaggttttttggttaatttggcatacaac |
14726719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 17596560 - 17596791
Alignment:
| Q |
1 |
ttatcctagtggggggttcgattgactgtgcagtttgtgtggggaagatggaaacatcagtgcttctgtttcttcactgcaagtttgcagcaatggtttg |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17596560 |
ttatcctagtggggggttcgattgactgtggagtttgtgtggggaaggtggaaacatcagtgcttctgtttcttcactgcaagtttgcagcaatggtttg |
17596659 |
T |
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| Q |
101 |
gtttagtgtgtttcagaggctttggttgtttttggtgttgccaccaaatttttctgtccactttgaatgtttgagtggggctgcgcgatgtaagccatta |
200 |
Q |
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| T |
17596660 |
gtttagtgtgtttcagtggctttggttatttttggtgttgccaccaaatttttctgtccactttgaatgttttagtggggctgcgtgatgtaagccatta |
17596759 |
T |
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| Q |
201 |
aggaaagttttttggttaatttggcatacaac |
232 |
Q |
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||||| ||||||||||||||||||||| |||| |
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| T |
17596760 |
aggaaggttttttggttaatttggcatgcaac |
17596791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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