View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3274_low_1 (Length: 593)
Name: NF3274_low_1
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3274_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 6 - 593
Target Start/End: Complemental strand, 40415155 - 40414569
Alignment:
| Q |
6 |
acatccaatatgattgacataaatctgttagagaaaacgaagtgaatgggggagggaagattgtaagtgatagatttatataccttttctcttggctagc |
105 |
Q |
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| T |
40415155 |
acatccaatatgattgacataaatctgttagagaaaacgaagtgaatgggggagggaagattgtaagtgatagatttata--ccttttctcttggctagc |
40415058 |
T |
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| Q |
106 |
atctatcctgtacttcaaacatcttggaaggaataatcgctacnnnnnnngacatgtactctgttagaatggattatacaacaatattttatatgtaaaa |
205 |
Q |
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| T |
40415057 |
atctatcctgtacttcaaacatcttggaaggaataatcgctacaaaaaaagacatgtactctgttagaatggattatacaacaatattttatatgtaaaa |
40414958 |
T |
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| Q |
206 |
tcttgagagaccataaatcaagaggccaggaggtaaaatagaaaggggattataaagtaacttcagataagaagtaaatagaaagtataagaaatgcttt |
305 |
Q |
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| T |
40414957 |
tcttgagagaccataaatcaagaggccaggaggtaaaatagaaaggggattataaagtaacttcagataagaagtaaatagaaagtataagaaatgcttt |
40414858 |
T |
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| Q |
306 |
caaaacaacaggtatagaaagaagaagnnnnnnnnccaaaagataccccataattctatccttcaactctctccctttccctgtaactaactct-ccccc |
404 |
Q |
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| T |
40414857 |
caaaacaacaggtatagaaagaagaagaaaaaaaaccaaaagataccccataattctatccttcaactctctccctttccctgtaactaactctcccccc |
40414758 |
T |
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| Q |
405 |
catctataattttcatctgtggatgactctaactggaccatggacaattgggactacaaataaggtacctaccggacgatgaagaagaacgttgtaaaac |
504 |
Q |
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| T |
40414757 |
catctataattttcatctgtggatgactctaactggaccatggacaattgggactacaaataaggtacctaccggacgatgaagaagaacgttgtaaaac |
40414658 |
T |
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| Q |
505 |
tctataggcttgcaaaaacctgtaagagtccattccccagcgactttctctgctacagataaatccgcactagtatctagaggtctagg |
593 |
Q |
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| T |
40414657 |
tctataggcttgcaaaaacctgtaaaagtccattccccagcgactttctctgctacagataaatccgcactagtatctagaggtctagg |
40414569 |
T |
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