View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3274_low_10 (Length: 250)

Name: NF3274_low_10
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3274_low_10
NF3274_low_10
[»] chr8 (22 HSPs)
chr8 (10-117)||(28335923-28336030)
chr8 (14-117)||(28340517-28340620)
chr8 (130-240)||(27164592-27164703)
chr8 (136-229)||(27163135-27163229)
chr8 (136-229)||(39810031-39810125)
chr8 (190-229)||(28574612-28574651)
chr8 (136-229)||(39808666-39808760)
chr8 (190-240)||(6105629-6105679)
chr8 (122-226)||(28561438-28561543)
chr8 (190-224)||(28561969-28562003)
chr8 (122-226)||(28566936-28567041)
chr8 (190-224)||(28567467-28567501)
chr8 (190-227)||(42350124-42350161)
chr8 (193-229)||(5703129-5703165)
chr8 (193-229)||(5704475-5704511)
chr8 (190-229)||(1601198-1601237)
chr8 (190-229)||(3252236-3252275)
chr8 (193-240)||(21397816-21397863)
chr8 (193-240)||(21792309-21792356)
chr8 (141-227)||(28575059-28575145)
chr8 (190-229)||(42349034-42349073)
chr8 (190-228)||(39913880-39913918)
[»] chr5 (25 HSPs)
chr5 (122-240)||(11438343-11438462)
chr5 (130-240)||(15061757-15061868)
chr5 (141-240)||(21775485-21775585)
chr5 (141-229)||(21776851-21776940)
chr5 (190-240)||(33750991-33751041)
chr5 (190-240)||(41064218-41064268)
chr5 (141-229)||(40434014-40434099)
chr5 (190-229)||(11956213-11956252)
chr5 (190-229)||(15060237-15060276)
chr5 (190-229)||(15616444-15616483)
chr5 (190-229)||(30798523-30798562)
chr5 (190-229)||(37274819-37274858)
chr5 (190-240)||(11957582-11957632)
chr5 (194-240)||(33847188-33847234)
chr5 (142-225)||(30796603-30796687)
chr5 (193-240)||(4061443-4061490)
chr5 (190-229)||(8367943-8367982)
chr5 (190-229)||(15615176-15615215)
chr5 (190-229)||(41065601-41065640)
chr5 (190-228)||(10011687-10011725)
chr5 (190-240)||(33751958-33752008)
chr5 (130-229)||(10012752-10012851)
chr5 (141-170)||(29520157-29520186)
chr5 (122-174)||(37274752-37274805)
chr5 (190-226)||(29521377-29521413)
[»] scaffold0250 (1 HSPs)
scaffold0250 (113-240)||(11502-11631)
[»] chr3 (18 HSPs)
chr3 (122-229)||(28208090-28208198)
chr3 (130-229)||(10615287-10615387)
chr3 (122-240)||(46596099-46596218)
chr3 (190-240)||(15093647-15093697)
chr3 (190-229)||(10616716-10616755)
chr3 (190-229)||(43930745-43930784)
chr3 (130-225)||(46610021-46610117)
chr3 (198-229)||(28207059-28207090)
chr3 (190-240)||(37976042-37976091)
chr3 (194-227)||(2011133-2011166)
chr3 (195-240)||(2011894-2011939)
chr3 (192-229)||(27315269-27315306)
chr3 (136-169)||(37975988-37976021)
chr3 (195-228)||(52396393-52396426)
chr3 (190-218)||(14824824-14824852)
chr3 (190-218)||(14826031-14826059)
chr3 (193-229)||(43929983-43930019)
chr3 (190-218)||(48288317-48288345)
[»] scaffold0227 (1 HSPs)
scaffold0227 (190-240)||(24871-24921)
[»] chr2 (20 HSPs)
chr2 (190-240)||(38876955-38877005)
chr2 (122-240)||(5969729-5969852)
chr2 (190-229)||(21903998-21904037)
chr2 (190-229)||(38876063-38876102)
chr2 (190-240)||(1904342-1904392)
chr2 (141-229)||(44366891-44366980)
chr2 (130-228)||(7576337-7576437)
chr2 (130-229)||(38937453-38937553)
chr2 (190-229)||(1903004-1903043)
chr2 (190-229)||(38815038-38815077)
chr2 (190-229)||(38936017-38936056)
chr2 (190-229)||(38937003-38937042)
chr2 (190-228)||(36565309-36565347)
chr2 (190-229)||(7577721-7577760)
chr2 (190-229)||(11101168-11101206)
chr2 (190-229)||(38813649-38813688)
chr2 (190-224)||(11102115-11102149)
chr2 (193-229)||(10355265-10355301)
chr2 (129-169)||(19686185-19686225)
chr2 (193-229)||(41307092-41307128)
[»] chr6 (12 HSPs)
chr6 (128-229)||(33485020-33485123)
chr6 (141-229)||(22056506-22056595)
chr6 (136-228)||(22058224-22058317)
chr6 (190-229)||(24234403-24234442)
chr6 (190-229)||(24914512-24914551)
chr6 (141-229)||(24235575-24235664)
chr6 (130-228)||(12321574-12321674)
chr6 (190-229)||(6000615-6000654)
chr6 (190-229)||(12322748-12322787)
chr6 (190-239)||(11425703-11425752)
chr6 (122-174)||(6000672-6000724)
chr6 (190-218)||(6759078-6759106)
[»] chr1 (22 HSPs)
chr1 (122-240)||(8930281-8930399)
chr1 (135-229)||(14626723-14626818)
chr1 (190-229)||(5560945-5560984)
chr1 (190-229)||(52084770-52084809)
chr1 (190-228)||(37194435-37194473)
chr1 (190-227)||(13916164-13916201)
chr1 (190-226)||(13917219-13917255)
chr1 (190-229)||(9441641-9441680)
chr1 (190-229)||(9442934-9442973)
chr1 (112-228)||(23321257-23321375)
chr1 (190-229)||(37193551-37193590)
chr1 (122-173)||(38742383-38742434)
chr1 (190-229)||(44311280-44311319)
chr1 (142-176)||(2274661-2274695)
chr1 (190-240)||(30536440-30536490)
chr1 (190-227)||(14625443-14625480)
chr1 (194-228)||(4487617-4487651)
chr1 (190-227)||(23322556-23322593)
chr1 (195-240)||(38741553-38741598)
chr1 (193-229)||(6077016-6077052)
chr1 (136-176)||(29988620-29988660)
chr1 (193-229)||(37269605-37269641)
[»] chr7 (15 HSPs)
chr7 (190-237)||(34158131-34158178)
chr7 (141-229)||(17764644-17764733)
chr7 (129-229)||(1831925-1832025)
chr7 (195-240)||(47637794-47637839)
chr7 (190-229)||(17763410-17763449)
chr7 (193-240)||(35891083-35891130)
chr7 (190-229)||(48170206-48170245)
chr7 (130-229)||(9553412-9553513)
chr7 (141-229)||(9554204-9554293)
chr7 (190-240)||(24436319-24436369)
chr7 (190-225)||(1830885-1830920)
chr7 (190-229)||(11056806-11056845)
chr7 (190-229)||(13772585-13772624)
chr7 (136-175)||(11058169-11058209)
chr7 (190-226)||(47638765-47638801)
[»] chr4 (22 HSPs)
chr4 (136-229)||(29249654-29249748)
chr4 (136-229)||(34739907-34740001)
chr4 (190-240)||(34741327-34741377)
chr4 (110-218)||(52264437-52264545)
chr4 (190-229)||(29248315-29248354)
chr4 (190-229)||(43537524-43537563)
chr4 (190-240)||(2438325-2438375)
chr4 (130-226)||(20962206-20962303)
chr4 (190-228)||(51754144-51754182)
chr4 (190-239)||(37421836-37421885)
chr4 (190-227)||(46426174-46426211)
chr4 (193-240)||(9410076-9410123)
chr4 (194-229)||(12566883-12566918)
chr4 (190-229)||(20963644-20963683)
chr4 (190-229)||(21994398-21994437)
chr4 (190-229)||(40479461-40479500)
chr4 (190-229)||(46427191-46427230)
chr4 (122-165)||(51754210-51754253)
chr4 (132-174)||(9564292-9564334)
chr4 (190-228)||(51752756-51752794)
chr4 (194-228)||(54555295-54555329)
chr4 (195-240)||(9410214-9410259)
[»] scaffold0129 (2 HSPs)
scaffold0129 (190-240)||(37325-37375)
scaffold0129 (190-218)||(30798-30826)
[»] scaffold0040 (2 HSPs)
scaffold0040 (193-237)||(64579-64623)
scaffold0040 (190-229)||(65987-66026)
[»] scaffold0210 (2 HSPs)
scaffold0210 (136-228)||(4726-4819)
scaffold0210 (195-240)||(16697-16742)
[»] scaffold0093 (1 HSPs)
scaffold0093 (190-240)||(8981-9031)
[»] scaffold0246 (2 HSPs)
scaffold0246 (190-229)||(15948-15987)
scaffold0246 (190-229)||(17400-17439)
[»] scaffold0176 (1 HSPs)
scaffold0176 (190-229)||(231-270)
[»] scaffold0112 (1 HSPs)
scaffold0112 (193-240)||(36138-36185)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 28336030 - 28335923
Alignment:
Q  10 gttggaattttctagggctttaggccgtcggtaatgtttgcgagtagtatcatgttttcttgttgtgtatgatctccaatttagtctcttagctatataa 109  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28336030 gttggaattttctagggatttaggccatcagtaatgtttgcgagtagtatcatgttttcttgttgtgtatgatctccaatttagtctcttagctatataa 28335931  T
Q  110 atataata 117  Q
    ||||||||    
T  28335930 atataata 28335923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 28340620 - 28340517
Alignment:
Q  14 gaattttctagggctttaggccgtcggtaatgtttgcgagtagtatcatgttttcttgttgtgtatgatctccaatttagtctcttagctatataaatat 113  Q
    ||||||||||||||||| ||||||||||||  |||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  28340620 gaattttctagggcttttggccgtcggtaacatttgcaggtagtatcatgttttctttttgtgtatgatcttcaatttagtctcttagctatataaatat 28340521  T
Q  114 aata 117  Q
    ||||    
T  28340520 aata 28340517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 27164703 - 27164592
Alignment:
Q  130 ctttatcccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||| |||| ||||||||||| ||||||||||||||||| ||||||           || ||||||||||||||||| |||||||||||||||||||||    
T  27164703 ctttaccccctgtaatatagggcacttttggttttgccccctgtaaaattttttttttagattccgtccttgtaaaatgaagattcttcaagattgcccc 27164604  T
Q  229 cagacccctatg 240  Q
    | || |||||||    
T  27164603 ctgagccctatg 27164592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 27163135 - 27163229
Alignment:
Q  136 cccccgtaatatagggtacttttggttttg-cccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| ||||||||||| ||||||||||||| |||||||||| |         || ||||||||||||||||| ||||||||||||||||||||||    
T  27163135 cccctgtaatatagggcacttttggttttggcccctgtaaaaaaatttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 27163229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 39810125 - 39810031
Alignment:
Q  136 cccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| ||||||||||| ||||||||||||||||| |||||||          || ||||||||||||||||| ||||||||||||||||||||||    
T  39810125 cccctgtaatatagggcacttttggttttgccccctgtaaattattttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 39810031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 28574612 - 28574651
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  28574612 ttccgtccttttaaaataaagattcttcaagattgccccc 28574651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 39808666 - 39808760
Alignment:
Q  136 cccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| ||||||||||| ||||||||||||||||| |||||| |         || ||| ||||||||||||| ||||||||||||||||||||||    
T  39808666 cccctgtaatatagggcacttttggttttgccccctgtaaaaaaaaaaatttagattctgtccttgtaaaatgaagattcttcaagattgccccc 39808760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 6105629 - 6105679
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||||| |||||||||||||||||||||| |||||||||| |||| |||||    
T  6105629 ttccgtacttgtaaaataaagattcttcaggattgccccctgacctctatg 6105679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 28561438 - 28561543
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttgcccctgtaaa-tannnnnnnnnagcttccgtccttgtaaaataaagattcttcaag 220  Q
    ||||| ||||||| |||| ||||||||||| |||||||||||  |||||||||| ||         || ||| ||||||||||||||| |||||||||||    
T  28561438 taatagagctttaccccctgtaatatagggcacttttggtttcccccctgtaaagtatttttttttagattctgtccttgtaaaataaggattcttcaag 28561537  T
Q  221 attgcc 226  Q
    ||||||    
T  28561538 attgcc 28561543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 28562003 - 28561969
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattg 224  Q
    |||||||||||||||||||||||||||||||||||    
T  28562003 ttccgtccttgtaaaataaagattcttcaagattg 28561969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 28566936 - 28567041
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttgcccctgtaaa-tannnnnnnnnagcttccgtccttgtaaaataaagattcttcaag 220  Q
    ||||| ||||||| |||| ||||||||||| |||||||||||  |||||||||| ||         || ||| ||||||||||||||| |||||||||||    
T  28566936 taatagagctttaccccctgtaatatagggcacttttggtttcccccctgtaaagtatttttttttagattctgtccttgtaaaataaggattcttcaag 28567035  T
Q  221 attgcc 226  Q
    ||||||    
T  28567036 attgcc 28567041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 28567501 - 28567467
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattg 224  Q
    |||||||||||||||||||||||||||||||||||    
T  28567501 ttccgtccttgtaaaataaagattcttcaagattg 28567467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 42350161 - 42350124
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccc 227  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  42350161 ttccgtccttgtaaaatgaagattcttcaagattgccc 42350124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 5703129 - 5703165
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5703129 cgtccttgtaaaataaagattcttcaagattgtcccc 5703165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 5704511 - 5704475
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||||||||||||| |||||    
T  5704511 cgtccttgtaaaataaagattcttcaagattaccccc 5704475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 1601237 - 1601198
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  1601237 ttccgtccttgtaaaatgaagattcttcacgattgccccc 1601198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 3252236 - 3252275
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  3252236 ttccgtccttataaaataaagattcttcacgattgccccc 3252275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 21397863 - 21397816
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||||||||||||||||||||||||||| |||| |||  |||||||||    
T  21397863 cgtccttgtaaaataaagattcttcaaggttgcaccctaacccctatg 21397816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 21792356 - 21792309
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||||||||||||||||||||||||||| |||| |||  |||||||||    
T  21792356 cgtccttgtaaaataaagattcttcaaggttgcaccctaacccctatg 21792309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 28575145 - 28575059
Alignment:
Q  141 gtaatatagggtacttttggttttgcccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccc 227  Q
    ||||||||||| |||||||||||| |||||| ||||          || || ||||||| |||||||||||||||||||||||||||    
T  28575145 gtaatatagggcacttttggttttccccctgcaaatttttttttttagatttcgtccttataaaataaagattcttcaagattgccc 28575059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 42349034 - 42349073
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  42349034 ttccgtccttgtaaaatgaagattcttcaagattgtcccc 42349073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 39913918 - 39913880
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  39913918 ttccgtccttgtaaaatgaagattcttcacgattgcccc 39913880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 11438343 - 11438462
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttgc-ccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaag 220  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||          || |||||||| |||||||||||||||||||| |    
T  11438343 taatagagctttaccccctgtaatatagggtacttttggttttgctccctgtaaatttttttttttagattccgtccatgtaaaataaagattcttcagg 11438442  T
Q  221 attgcccccagacccctatg 240  Q
    |||| |||| ||||||||||    
T  11438443 attgtcccctgacccctatg 11438462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 15061868 - 15061757
Alignment:
Q  130 ctttatcccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||| |||| ||||||||||| ||||||||||||||||| |||||| |         || ||||||||||||||||| |||||||||||||||||||||    
T  15061868 ctttaccccctgtaatatagggcacttttggttttgccccctgtaaaaaaataaatttagattccgtccttgtaaaatgaagattcttcaagattgcccc 15061769  T
Q  229 cagacccctatg 240  Q
    | || |||||||    
T  15061768 ctgagccctatg 15061757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 21775485 - 21775585
Alignment:
Q  141 gtaatatagggtacttttggttttgcccct-gtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcccccagacccctat 239  Q
    ||||||||||| |||||||||||||||||| ||||| |         || ||||||||||||||||| |||||||||||||||||||||| || ||||||    
T  21775485 gtaatatagggcacttttggttttgccccttgtaaaaaaaaaattttagattccgtccttgtaaaatgaagattcttcaagattgccccctgaaccctat 21775584  T
Q  240 g 240  Q
    |    
T  21775585 g 21775585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 21776940 - 21776851
Alignment:
Q  141 gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||| ||||||||||||||||| |||||||          || ||||||||||||||||| ||||||||||||||||||||||    
T  21776940 gtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 21776851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 33750991 - 33751041
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||||||||||| |||||||||| || |||||||    
T  33750991 ttccgtccttgtaaaataaagattcttcaggattgccccctgatccctatg 33751041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 41064218 - 41064268
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  41064218 ttccgtccttgtaaaatgaagattcttcaagattgccccctgagccctatg 41064268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 40434014 - 40434099
Alignment:
Q  141 gtaatatagggtacttttggttttgcccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||| ||||||| ||||||||||||||| |         || ||||||||||||||||||||||||||||| ||||||||||    
T  40434014 gtaatatagggcacttttgattttgcccctgtaaaaaaaaatt---agattccgtccttgtaaaataaagattcttcaggattgccccc 40434099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 11956213 - 11956252
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  11956213 ttccgtccttgtaaaatgaagattcttcaagattgccccc 11956252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 15060237 - 15060276
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  15060237 ttccgtccttgtaaaatgaagattcttcaagattgccccc 15060276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 15616483 - 15616444
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  15616483 ttccgtccttgtaaaatgaagattcttcaagattgccccc 15616444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 30798562 - 30798523
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  30798562 ttccgtccttgtaaaatgaagattcttcaagattgccccc 30798523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 37274819 - 37274858
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  37274819 ttccgtccttgtaaaataaagattcttcaggattgccccc 37274858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 11957632 - 11957582
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||| | |||||||||||||||||||| || |||||||    
T  11957632 ttccgtccttgtaaaatgacgattcttcaagattgccccctgagccctatg 11957582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 33847188 - 33847234
Alignment:
Q  194 gtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||    
T  33847188 gtccttgtaaaataaagattcttcaggattgccccctgatccctatg 33847234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 30796603 - 30796687
Alignment:
Q  142 taatatagggtacttttggttttgcccct-gtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgc 225  Q
    |||||||||| |||||||||||||||||| ||||||          || ||||||||||||||||| ||||||||||||||||||    
T  30796603 taatatagggcacttttggttttgccccttgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgc 30796687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 4061490 - 4061443
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||||||||||||||||||||||||| ||||| |||| ||||| ||||    
T  4061490 cgtccttgtaaaataaagattcttcaggattgtcccctgacccttatg 4061443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 8367982 - 8367943
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  8367982 ttccgtccttgtaaaatgaagattcttcacgattgccccc 8367943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 15615176 - 15615215
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  15615176 ttccgtccttgtaaattgaagattcttcaagattgccccc 15615215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 41065640 - 41065601
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  41065640 ttccttccttgtaaaatgaagattcttcaagattgccccc 41065601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 10011687 - 10011725
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  10011687 ttccgtccttataaaataaagattcttcacgattgcccc 10011725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 33752008 - 33751958
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||| |||||||||||| |||||||||||||| |||| | ||||||||    
T  33752008 ttccgtcattgtaaaataaaaattcttcaagattgtcccctgccccctatg 33751958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 10012851 - 10012752
Alignment:
Q  130 ctttatcccccgtaatatagggtacttttggttttg-cccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    |||||||| | ||||||||||||||||||||||||| ||||| ||| ||         || || |||||||||||||| ||||||||||| |||||||||    
T  10012851 ctttatcctctgtaatatagggtacttttggttttgtcccctataa-tatttttttttagatttcgtccttgtaaaatgaagattcttcacgattgcccc 10012753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 29520157 - 29520186
Alignment:
Q  141 gtaatatagggtacttttggttttgcccct 170  Q
    ||||||||||||||||||||||||||||||    
T  29520157 gtaatatagggtacttttggttttgcccct 29520186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 37274752 - 37274805
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttg-cccctgtaa 174  Q
    ||||| ||||||| ||||  |||||||||||||||||||||||| |||||||||    
T  37274752 taatagagctttaccccctataatatagggtacttttggttttgccccctgtaa 37274805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 29521413 - 29521377
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcc 226  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  29521413 ttccgtccttgtaaaatgaagattcttcacgattgcc 29521377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 11631 - 11502
Alignment:
Q  113 taataggaataatacagctttatccccc-gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaag 210  Q
    |||||||  ||||| ||||||| ||||| ||||||||  ||||||||||||||||||| |||||||          || |||||||||||||||||||||    
T  11631 taatagggttaatagagctttacccccctgtaatatatagtacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaataaag 11532  T
Q  211 attcttcaagattgcccccagacccctatg 240  Q
    |||||||| |||||||||| ||||||||||    
T  11531 attcttcaggattgccccctgacccctatg 11502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 28208198 - 28208090
Alignment:
Q  122 taatacagctttatccccc-gtaatatagggtacttttggttttgcccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaag 220  Q
    ||||| ||||||| ||||| ||||||||||| |||||||||||| ||||||||| |          || |||||||||||||||||||||||||||||||    
T  28208198 taatagagctttacccccctgtaatatagggcacttttggttttccccctgtaattttttttttttagattccgtccttgtaaaataaagattcttcaag 28208099  T
Q  221 attgccccc 229  Q
    |||||||||    
T  28208098 attgccccc 28208090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 10615287 - 10615387
Alignment:
Q  130 ctttatcccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||| |||| ||||||||||| ||||||||||||||||| |||||||          || ||||||||||||||||| |||||||||||||||||||||    
T  10615287 ctttaccccctgtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgcccc 10615386  T
Q  229 c 229  Q
    |    
T  10615387 c 10615387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 46596099 - 46596218
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttg-cccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaag 220  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||| ||| |||||| |         || |||| || ||||||||||||||||||||| |    
T  46596099 taatagagctttaccccctgtaatatagggtacttttggttttgtcccatgtaaaaaaaaaaacttagattccatcattgtaaaataaagattcttcagg 46596198  T
Q  221 attgcccccagacccctatg 240  Q
    ||||||||  ||||||||||    
T  46596199 attgccccatgacccctatg 46596218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 15093697 - 15093647
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||||||    
T  15093697 ttccatccttgtaaaataaagattcttcaggattgccccctgacccctatg 15093647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 10616755 - 10616716
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  10616755 ttccgtccttgtaaaatgaagattcttcaagattgccccc 10616716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 43930784 - 43930745
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  43930784 ttccatccttgtaaaataaagattcttcaagattgccccc 43930745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 46610021 - 46610117
Alignment:
Q  130 ctttatcccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgc 225  Q
    ||||| |||| ||||||||||| ||||||||||||||||| ||||| |          || ||||||||||||||||| ||||||||||||||||||    
T  46610021 ctttaccccctgtaatatagggcacttttggttttgccccctgtaattttttttttttagattccgtccttgtaaaatgaagattcttcaagattgc 46610117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Original strand, 28207059 - 28207090
Alignment:
Q  198 ttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||||||||||||||    
T  28207059 ttgtaaaataaagattcttcaagattgccccc 28207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 37976042 - 37976091
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||||||||||||||||||||||||| || ||||| || ||||||||||||    
T  37976042 ttccgtccttgtaaaataaagattctccaggattg-cctcagacccctatg 37976091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 2011133 - 2011166
Alignment:
Q  194 gtccttgtaaaataaagattcttcaagattgccc 227  Q
    ||||||||||||||||||||||||| ||||||||    
T  2011133 gtccttgtaaaataaagattcttcaggattgccc 2011166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 2011939 - 2011894
Alignment:
Q  195 tccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||||||||||||||||||||||| ||||| |||| || |||||||    
T  2011939 tccttgtaaaataaagattcttcaggattgtcccctgaaccctatg 2011894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 27315269 - 27315306
Alignment:
Q  192 ccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  27315269 ccgtccttgtaaaataaagatttttcaggattgccccc 27315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 37975988 - 37976021
Alignment:
Q  136 cccccgtaatatagggtacttttggttttgcccc 169  Q
    |||| |||||||||||||||||||||||||||||    
T  37975988 cccctgtaatatagggtacttttggttttgcccc 37976021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 52396426 - 52396393
Alignment:
Q  195 tccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||| ||||||||||||||||||||||||||||    
T  52396426 tccttataaaataaagattcttcaagattgcccc 52396393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 14824824 - 14824852
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttca 218  Q
    |||||||||||||||||||||||||||||    
T  14824824 ttccgtccttgtaaaataaagattcttca 14824852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 14826059 - 14826031
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttca 218  Q
    |||||||||||||||||||||||||||||    
T  14826059 ttccgtccttgtaaaataaagattcttca 14826031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 43929983 - 43930019
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  43929983 cgtccttgtaaaataaagattattcaagaatgccccc 43930019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 48288345 - 48288317
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttca 218  Q
    |||||||||||||||||||||||||||||    
T  48288345 ttccgtccttgtaaaataaagattcttca 48288317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 24921 - 24871
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  24921 ttccgtccttgtaaaataaagattcttcaggattgccccctgacccctatg 24871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 38877005 - 38876955
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||    
T  38877005 ttccgtccttgtaaaataaagattcttcaagattgccccctgagccctatg 38876955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 5969729 - 5969852
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttgcc-cctgtaaatannnnnnnnn----agcttccgtccttgtaaaataaagattctt 216  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||              || |||||||||||||||||||||||||||    
T  5969729 taatagagctttatcccctgtaatatagggtacttttggttttgcctcctgtaaatttttttttttttttagattccgtccttgtaaaataaagattctt 5969828  T
Q  217 caagattgcccccagacccctatg 240  Q
     | ||||| |||| ||||||||||    
T  5969829 aatgattgtcccctgacccctatg 5969852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 21903998 - 21904037
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21903998 ttccgtccttgtaaaataaagattcttcaagattgccccc 21904037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 38876063 - 38876102
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38876063 ttccgtccttgtaaaataaagattcttcaagattgccccc 38876102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 1904392 - 1904342
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  1904392 ttccgtccttgtaaaatgaagattcttcaagattgccccctgagccctatg 1904342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 44366891 - 44366980
Alignment:
Q  141 gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||| ||||||||||||||||| |||||||          || ||||||||||||||||| ||||||||||||||||||||||    
T  44366891 gtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 44366980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 7576337 - 7576437
Alignment:
Q  130 ctttatccccc-gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccc 227  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||||||           || ||||||||||||||||| ||||||||||||||||||||    
T  7576337 ctttatccccctgtaatatagggcacttttggttttgccccctgtaaaatattttttttagattccgtccttgtaaaatgaagattcttcaagattgccc 7576436  T
Q  228 c 228  Q
    |    
T  7576437 c 7576437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 38937553 - 38937453
Alignment:
Q  130 ctttatcccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||| |||| ||||||||||| ||||||||||||||||| | |||| |         || ||||||||||||||||| |||||||||||||||||||||    
T  38937553 ctttaccccctgtaatatagggcacttttggttttgccccctataaaaaaaaaaaattagattccgtccttgtaaaatgaagattcttcaagattgcccc 38937454  T
Q  229 c 229  Q
    |    
T  38937453 c 38937453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 1903004 - 1903043
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  1903004 ttccgtccttgtaaaatgaagattcttcaagattgccccc 1903043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 38815077 - 38815038
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  38815077 ttccgtccttgtaaaatgaagattcttcaagattgccccc 38815038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 38936017 - 38936056
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  38936017 ttccgtccttgtaaaatgaagattcttcaagattgccccc 38936056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 38937003 - 38937042
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  38937003 ttccgtccttgtaaaatgaagattcttcaagattgccccc 38937042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 36565309 - 36565347
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  36565309 ttccgtccttgtaaaataaagattcttcaggattgcccc 36565347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 7577760 - 7577721
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  7577760 ttccgtccttgtaaaatgaagattcatcaagattgccccc 7577721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 11101168 - 11101206
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  11101168 ttccgtccttg-aaaataaagattcttcaagattgccccc 11101206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 38813649 - 38813688
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  38813649 ttccgtccttgtaaaatgaatattcttcaagattgccccc 38813688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 11102149 - 11102115
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattg 224  Q
    |||||||||| ||||||||||||||||||||||||    
T  11102149 ttccgtccttttaaaataaagattcttcaagattg 11102115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 10355301 - 10355265
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  10355301 cgtccttgtaaaataaagattcttcaggattgtcccc 10355265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 19686225 - 19686185
Alignment:
Q  129 gctttatcccccgtaatatagggtacttttggttttgcccc 169  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  19686225 gctttaccccctgtaatatagggcacttttggttttgcccc 19686185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 41307128 - 41307092
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| |||||||||||| |||||||||||||||||||    
T  41307128 cgtctttgtaaaataaatattcttcaagattgccccc 41307092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 33485123 - 33485020
Alignment:
Q  128 agctttatccccc-gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgc 225  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||||||          |  ||||||||||||||||||||||||||||| ||||||    
T  33485123 agctttacccccctgtaatatagggtacttttggttttgccccctgtaaattttttttttaaaattccgtccttgtaaaataaagattcttcaggattgc 33485024  T
Q  226 cccc 229  Q
    ||||    
T  33485023 cccc 33485020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 22056506 - 22056595
Alignment:
Q  141 gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||| ||||||||||||||||| |||||||          || ||||||||||||||||| ||||||||||||||||||||||    
T  22056506 gtaatatagggcacttttggttttgccccctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 22056595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 22058317 - 22058224
Alignment:
Q  136 cccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    |||| ||||||||||| ||||||||||||||||| |||||||          || ||||||||||||||||| |||||||||||||||||||||    
T  22058317 cccctgtaatatagggcacttttggttttgccccctgtaaattcttttttttagattccgtccttgtaaaatgaagattcttcaagattgcccc 22058224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 24234403 - 24234442
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  24234403 ttccgtccttgtaaaatgaagattcttcaagattgccccc 24234442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 24914512 - 24914551
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  24914512 ttccgtccttgtaaaatgaagattcttcaagattgccccc 24914551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 24235664 - 24235575
Alignment:
Q  141 gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||| ||||||||||||||||| |||||| |         || ||| ||||||||||||| ||||||||||||||||||||||    
T  24235664 gtaatatagggcacttttggttttgccccctgtaaaaatttatttttagattctgtccttgtaaaatgaagattcttcaagattgccccc 24235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 12321574 - 12321674
Alignment:
Q  130 ctttatccccc-gtaatatagggtacttttggttttgcc-cctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccc 227  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| |          || || |||||||||||||| ||||||||||| ||||||||    
T  12321574 ctttatccccctgtaatatagggtacttttggttttgcctcctgtaattttttttttatagatttcgtccttgtaaaatgaagattcttcacgattgccc 12321673  T
Q  228 c 228  Q
    |    
T  12321674 c 12321674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 6000654 - 6000615
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  6000654 ttccatccttgtaaaataaagattcttcaggattgccccc 6000615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 12322787 - 12322748
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  12322787 ttccgtccttgtaaaatgaagattcttcacgattgccccc 12322748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 11425752 - 11425703
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctat 239  Q
    ||||||| ||||||||||||||||| |||||||| |||||  ||||||||    
T  11425752 ttccgtctttgtaaaataaagattcatcaagattaccccctaacccctat 11425703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 6000724 - 6000672
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttgcccctgtaa 174  Q
    ||||| ||||||| |||| ||||||||| | |||||||||||| |||||||||    
T  6000724 taatagagctttaccccctgtaatatagagcacttttggttttccccctgtaa 6000672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 6759078 - 6759106
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttca 218  Q
    |||||||||||||||||||||||||||||    
T  6759078 ttccgtccttgtaaaataaagattcttca 6759106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 8930399 - 8930281
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttg-cccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaag 220  Q
    ||||| || |||| |||| |||||||| |||||||||||||||| |||||||||| |         || || |||||||||||||||||||||||||| |    
T  8930399 taatagagttttaccccctgtaatataaggtacttttggttttgtcccctgtaaa-aaaaaaaattagatttcgtccttgtaaaataaagattcttcagg 8930301  T
Q  221 attgcccccagacccctatg 240  Q
    ||||||||| ||||||||||    
T  8930300 attgccccctgacccctatg 8930281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 14626818 - 14626723
Alignment:
Q  135 tcccccgtaatatagggtacttttggttttgcc-cctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||          || ||||||||||||||||| ||||||||||||||||||||||    
T  14626818 tcccctgtaatatagggcacttttggttttgcctcctgtaaatttttttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 14626723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 5560945 - 5560984
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5560945 ttccgtccttgtaaaataaagattcttcaagattgccccc 5560984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 52084809 - 52084770
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52084809 ttccgtccttgtaaaataaagattcttcaagattgccccc 52084770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 37194473 - 37194435
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37194473 ttccgtccttgtaaaataaagattcttcaagattgcccc 37194435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 13916164 - 13916201
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccc 227  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13916164 ttccgtccttgtaaaataaagattcttcaagattgccc 13916201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 13917255 - 13917219
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcc 226  Q
    |||||||||||||||||||||||||||||||||||||    
T  13917255 ttccgtccttgtaaaataaagattcttcaagattgcc 13917219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 9441641 - 9441680
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  9441641 ttccgtccttgtaaaatgaagattcttcaagattgccccc 9441680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 9442973 - 9442934
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  9442973 ttccgtccttgtaaaatgaagattcttcaagattgccccc 9442934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 23321257 - 23321375
Alignment:
Q  112 ataataggaataatacagctttatccccc-gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaa 209  Q
    ||||||||  ||||| | |||||||| || ||||||||||| ||||||||||||||||| |||||| |         || ||||||||||||||||| ||    
T  23321257 ataatagggttaatagatctttatcctcctgtaatatagggcacttttggttttgccccatgtaaaaaaaaaaaattagattccgtccttgtaaaatgaa 23321356  T
Q  210 gattcttcaagattgcccc 228  Q
    ||||||||| |||||||||    
T  23321357 gattcttcacgattgcccc 23321375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 37193551 - 37193590
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  37193551 ttccatccttgtaaaataaagattcttcaagattgccccc 37193590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 38742434 - 38742383
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttgcccctgta 173  Q
    ||||| ||||||| |||| ||||||||||||||||||| |||||||||||||    
T  38742434 taatagagctttaccccctgtaatatagggtacttttgattttgcccctgta 38742383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 44311280 - 44311319
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  44311280 ttccgtccatgtaaaataaagattcttcaagattgccccc 44311319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 2274695 - 2274661
Alignment:
Q  142 taatatagggtacttttggttttgcccctgtaaat 176  Q
    |||||||||||||||||||||||||||||||||||    
T  2274695 taatatagggtacttttggttttgcccctgtaaat 2274661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 30536440 - 30536490
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||||||||||| ||||||| || || |||||||    
T  30536440 ttccgtccttgtaaaataaagattcttcatgattgcctcctgatccctatg 30536490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 14625443 - 14625480
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccc 227  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14625443 ttccgtccttgtaaaatgaagattcttcaagattgccc 14625480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 4487617 - 4487651
Alignment:
Q  194 gtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||||||||||||||||||||||| |||||||||    
T  4487617 gtccttgtaaaataaagattcttcaggattgcccc 4487651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 23322593 - 23322556
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccc 227  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  23322593 ttccgtccttgtaaaatgaagattcttcacgattgccc 23322556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 38741553 - 38741598
Alignment:
Q  195 tccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||||||  |||||||||  |||||||||    
T  38741553 tccttgtaaaataaagattcttcagaattgccccctaacccctatg 38741598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 6077016 - 6077052
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  6077016 cgtccttgtaaaatgaagattcttcacgattgccccc 6077052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 29988620 - 29988660
Alignment:
Q  136 cccccgtaatatagggtacttttggttttgcccctgtaaat 176  Q
    ||||| ||||||| | |||||||||||||||||||||||||    
T  29988620 cccccttaatatatgctacttttggttttgcccctgtaaat 29988660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 37269641 - 37269605
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  37269641 cgtccttgtacaataaagattcttcaggattgccccc 37269605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 34158131 - 34158178
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccct 237  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  34158131 ttccgtccttgtaaaatgaagattcttcaagattgcccccagatccct 34158178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 17764733 - 17764644
Alignment:
Q  141 gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||| ||||||||||||||||| |||||| |         || ||||||||||||||||| ||||||||||||||||||||||    
T  17764733 gtaatatagggcacttttggttttgccccctgtaaaaaaaattttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 17764644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 1832025 - 1831925
Alignment:
Q  129 gctttatcccccgtaatatagggtacttttggttttgcccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    |||||| |||| ||||||||||| ||||||| |||| |||||||||||          || |||  ||||||||||||||||||||||||||||||||||    
T  1832025 gctttaccccctgtaatatagggcacttttgattttccccctgtaaatttttttttttagattctatccttgtaaaataaagattcttcaagattgcccc 1831926  T
Q  229 c 229  Q
    |    
T  1831925 c 1831925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 47637794 - 47637839
Alignment:
Q  195 tccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||    
T  47637794 tccttgtaaaataaagattcttcatgattgccccctgacccctatg 47637839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 17763410 - 17763449
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  17763410 ttccgtccttgtaaaatgaagattcttcaagattgccccc 17763449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 35891083 - 35891130
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  35891083 cgtctttgtaaaataaagattcttcaggattgccccctgacccctatg 35891130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 48170245 - 48170206
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  48170245 ttccgtccttgtaaaatgaagattcttcaagattgccccc 48170206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 9553412 - 9553513
Alignment:
Q  130 ctttatcccccgtaatatagggtacttttggttttgcc-cctgtaaat-annnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccc 227  Q
    ||||| |||| ||||||||||| ||||||||||||||| ||||||||| |         || ||||||||||||||||| ||||||||||| ||||||||    
T  9553412 ctttaccccctgtaatatagggcacttttggttttgcctcctgtaaattatttttttttagattccgtccttgtaaaatgaagattcttcacgattgccc 9553511  T
Q  228 cc 229  Q
    ||    
T  9553512 cc 9553513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 9554293 - 9554204
Alignment:
Q  141 gtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||| ||||||||||||||||| |||||| |         || ||||||||||||||||| ||||||||||| ||||||||||    
T  9554293 gtaatatagggcacttttggttttgccccctgtaaaaaaaaaaaattagattccgtccttgtaaaatgaagattcttcacgattgccccc 9554204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 24436369 - 24436319
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||| ||||    
T  24436369 ttccgtccttgtaaaataaagattcctcaggattgccccctgacccatatg 24436319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 1830885 - 1830920
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgc 225  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1830885 ttccgtctttgtaaaataaagattcttcaagattgc 1830920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 11056806 - 11056845
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  11056806 ttccgtccttgtaaaatgaagattcttcacgattgccccc 11056845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 13772624 - 13772585
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  13772624 ttccatccttgtaaaataaagattcttcaagattaccccc 13772585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 11058209 - 11058169
Alignment:
Q  136 cccccgtaatatagggtacttttggttttgcc-cctgtaaa 175  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  11058209 cccctgtaatatagggtacttttggttttgcctcctgtaaa 11058169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 47638801 - 47638765
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcc 226  Q
    |||||| |||||||||||||||||||||| |||||||    
T  47638801 ttccgtacttgtaaaataaagattcttcaggattgcc 47638765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 29249748 - 29249654
Alignment:
Q  136 cccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| ||||||||||| ||||||||||||||||| |||||||          || || |||||||||||||||||||||||||||||||||||||    
T  29249748 cccctgtaatatagggaacttttggttttgccccctgtaaatttttttttttagatttcgtccttgtaaaataaagattcttcaagattgccccc 29249654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 34739907 - 34740001
Alignment:
Q  136 cccccgtaatatagggtacttttggttttg-cccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||| ||||||||||| ||||||||||||| |||||||||| |         || ||||||||||||||||| ||||||||||||||||||||||    
T  34739907 cccctgtaatatagggcacttttggttttggcccctgtaaaaaaatttttttagattccgtccttgtaaaatgaagattcttcaagattgccccc 34740001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 34741377 - 34741327
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  34741377 ttccgtccttgtaaaatgaagattcttcaagattgccccctgagccctatg 34741327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 52264437 - 52264545
Alignment:
Q  110 atataataggaataatacagctttatcccccgtaatatagggtacttttggttttgcccctgtaaatannnnnnnnnagcttccgtccttgtaaaataaa 209  Q
    ||||||||||| |||||  | |||| |||||||||||||||  ||||||| ||||||||||||||| |         || ||||||||||||||||| ||    
T  52264437 atataataggactaatagtgttttaccccccgtaatataggccacttttgattttgcccctgtaaaaaaaaagttttagattccgtccttgtaaaatcaa 52264536  T
Q  210 gattcttca 218  Q
    |||||||||    
T  52264537 gattcttca 52264545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 29248315 - 29248354
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  29248315 ttccgtccttgtaaaatgaagattcttcaagattgccccc 29248354  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 43537524 - 43537563
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  43537524 ttccgtccttgtaaaataaagattcttcaggattgccccc 43537563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 2438325 - 2438375
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    |||| |||||||||||||||||||||||| |||||| ||| ||||||||||    
T  2438325 ttccatccttgtaaaataaagattcttcaggattgctccctgacccctatg 2438375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 20962206 - 20962303
Alignment:
Q  130 ctttatcccccgtaatatagggtacttttggttttgcccc-tgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcc 226  Q
    ||||| |||| |||||||| || ||||||||||||||||| |||||| |         || ||||||||||||||||| |||||||||||||||||||    
T  20962206 ctttaccccctgtaatatatggcacttttggttttgccccctgtaaaaatttttttttagattccgtccttgtaaaatgaagattcttcaagattgcc 20962303  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 51754182 - 51754144
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  51754182 ttccgtccttgtaaaataaagattcttcaggattgcccc 51754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 37421885 - 37421836
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctat 239  Q
    |||| ||||||||||||||||||| |||| |||||||| |||||||||||    
T  37421885 ttccatccttgtaaaataaagattattcaggattgccctcagacccctat 37421836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 46426174 - 46426211
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccc 227  Q
    |||||||||||||||||||||||||||||| |||||||    
T  46426174 ttccgtccttgtaaaataaagattcttcaaaattgccc 46426211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 9410076 - 9410123
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||| ||||||||  ||||||||| ||||||||||    
T  9410076 cgtccttgtaaaataaatattcttcagtattgccccctgacccctatg 9410123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 12566918 - 12566883
Alignment:
Q  194 gtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12566918 gtccttgtaaaatgaagattcttcaagattgccccc 12566883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 20963683 - 20963644
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  20963683 ttccgtccttgtaaaatgaagattcttcaagattgtcccc 20963644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 21994398 - 21994437
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  21994398 ttccgtccttgtaaaataaagattctttaggattgccccc 21994437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 40479500 - 40479461
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  40479500 ttccgtccttgtaaaatgaagattcttcacgattgccccc 40479461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 46427230 - 46427191
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  46427230 ttccgtccttataaaataaagattcatcaagattgccccc 46427191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 51754253 - 51754210
Alignment:
Q  122 taatacagctttatcccccgtaatatagggtacttttggttttg 165  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||    
T  51754253 taatagagctttaccccctgtaatatagggtacttttggttttg 51754210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 9564334 - 9564292
Alignment:
Q  132 ttatcccccgtaatatagggtacttttggttttgcccctgtaa 174  Q
    |||||||| |||||||||||||||||||||||  |||||||||    
T  9564334 ttatcccctgtaatatagggtacttttggtttaccccctgtaa 9564292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 51752756 - 51752794
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  51752756 ttccgtccttgtaaaatgaagattcttcacgattgcccc 51752794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 54555329 - 54555295
Alignment:
Q  194 gtccttgtaaaataaagattcttcaagattgcccc 228  Q
    ||||||||||||||||||||||||| |||||||||    
T  54555329 gtccttgtaaaataaagattcttcacgattgcccc 54555295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 9410259 - 9410214
Alignment:
Q  195 tccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||||||  ||||||||| | ||||||||    
T  9410259 tccttgtaaaataaagattcttcagtattgccccctgtcccctatg 9410214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 37375 - 37325
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  37375 ttccgtccttgtaaaataaagattcttcaggattgccccctaacccctatg 37325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 30798 - 30826
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttca 218  Q
    |||||||||||||||||||||||||||||    
T  30798 ttccgtccttgtaaaataaagattcttca 30826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 64579 - 64623
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgcccccagacccct 237  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  64579 cgtccttgtaaaataaagattcttcaggattgccccctgacccct 64623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 66026 - 65987
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  66026 ttccgtccttgtaaaatgaagattcttcacgattgccccc 65987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 4726 - 4819
Alignment:
Q  136 cccccgtaatatagggtacttttggttttgcc-cctgtaaatannnnnnnnnagcttccgtccttgtaaaataaagattcttcaagattgcccc 228  Q
    |||| ||||||||||| ||||||||||||||| |||||||| |         || ||||||||||||||||| ||||||||||| |||||||||    
T  4726 cccctgtaatatagggcacttttggttttgcctcctgtaaaaaaaaaaaattagattccgtccttgtaaaatgaagattcttcacgattgcccc 4819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 16697 - 16742
Alignment:
Q  195 tccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||| |||| |||||||||| |||| |||||    
T  16697 tccttgtaaaataaagattattcaggattgccccctgaccactatg 16742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 9031 - 8981
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||||||||||| ||||||| ||  |||||||||    
T  9031 ttccgtccttgtaaaataaagattcttcaggattgcctcctaacccctatg 8981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 15948 - 15987
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  15948 ttccgtccttgtaaaatgaagattcttcgagattgccccc 15987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 17439 - 17400
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  17439 ttccgtccttgtaaaatgaagattcttcacgattgccccc 17400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 270 - 231
Alignment:
Q  190 ttccgtccttgtaaaataaagattcttcaagattgccccc 229  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  270 ttccgtccttataaaatgaagattcttcaagattgccccc 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 36138 - 36185
Alignment:
Q  193 cgtccttgtaaaataaagattcttcaagattgcccccagacccctatg 240  Q
    ||||||||||||||||||||| |||| ||||||||||  |||||||||    
T  36138 cgtccttgtaaaataaagatttttcaggattgccccctaacccctatg 36185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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