View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3274_low_13 (Length: 242)
Name: NF3274_low_13
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3274_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28865300 - 28865519
Alignment:
| Q |
1 |
aatcacataactaccaattccataatcttctttcttttccttcaacaactctttgataattttaacttcatcacatcactatgagtcactttaacaatca |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28865300 |
aatcacataactac-aattccataatcttctttcttttccttcaaaaactctttgataattttaacttcataacatcactatgagtcactttaacaatca |
28865398 |
T |
|
| Q |
101 |
gcaacaaaccccagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggttatccttccaaggatggc |
200 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28865399 |
gcaacaaaccccagtatcatatccaccac------aggcttattcttcagctccatatgtaactgccccaccacctatgggttatccttccaaggatggc |
28865492 |
T |
|
| Q |
201 |
tctcaagggtaccctcaacaaaagatt |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
28865493 |
tctcaagggtaccctcaacaaaagatt |
28865519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 28862870 - 28862724
Alignment:
| Q |
81 |
atgagtcactttaacaatcagcaacaaaccccagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgg |
180 |
Q |
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|
|||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28862870 |
atgagtaacttcaacaatcagcaacaagccccagtatcatatccaccacaaggtgagggttattcttcagcaccatatgtaactgccccaccacctatgg |
28862771 |
T |
|
| Q |
181 |
gttatccttccaaggatggctctcaagggtaccctcaacaaaagatt |
227 |
Q |
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| T |
28862770 |
gttatccttccaaggatggctctcaagggtaccctcaacaaaagatt |
28862724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 36059432 - 36059547
Alignment:
| Q |
112 |
cagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggttatccttccaaggatggctctcaagggta |
211 |
Q |
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||||||||||||||||||| ||||||| ||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36059432 |
cagtatcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccaccacctatgggttatccttccaaggatggctctgcagggta |
36059531 |
T |
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| Q |
212 |
ccctcaacaaaagatt |
227 |
Q |
| |
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||| ||||||| |||| |
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| T |
36059532 |
cccccaacaaaggatt |
36059547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 18617030 - 18616939
Alignment:
| Q |
93 |
aacaatcagcaacaaaccccagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggtta |
184 |
Q |
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|
|||||||| |||||| |||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||||||||||||||| |
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| T |
18617030 |
aacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggtta |
18616939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 15099419 - 15099510
Alignment:
| Q |
93 |
aacaatcagcaacaaaccccagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggtta |
184 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||||||||||||||| |
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| T |
15099419 |
aacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggtta |
15099510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 15110654 - 15110745
Alignment:
| Q |
93 |
aacaatcagcaacaaaccccagtatcatatccaccaccaggtgagggttattcatcagcaccatatgtaactgccccaccacctatgggtta |
184 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||||||||||||||| |
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| T |
15110654 |
aacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggtta |
15110745 |
T |
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