View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3274_low_15 (Length: 236)

Name: NF3274_low_15
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3274_low_15
NF3274_low_15
[»] chr4 (11 HSPs)
chr4 (1-172)||(25904366-25904537)
chr4 (171-223)||(25906598-25906650)
chr4 (1-50)||(17204007-17204056)
chr4 (5-48)||(44863108-44863151)
chr4 (1-48)||(47119087-47119134)
chr4 (1-49)||(45935365-45935413)
chr4 (4-48)||(49202527-49202571)
chr4 (1-49)||(27035-27083)
chr4 (9-49)||(4212812-4212852)
chr4 (9-49)||(27330185-27330225)
chr4 (9-49)||(44797762-44797802)
[»] chr5 (10 HSPs)
chr5 (1-123)||(40426558-40426680)
chr5 (1-48)||(32372495-32372542)
chr5 (1-48)||(24030554-24030601)
chr5 (171-214)||(40424299-40424341)
chr5 (1-49)||(28776855-28776903)
chr5 (5-48)||(3520302-3520345)
chr5 (1-52)||(13697911-13697962)
chr5 (1-49)||(7706131-7706179)
chr5 (9-49)||(12433530-12433570)
chr5 (1-49)||(32703590-32703638)
[»] chr7 (11 HSPs)
chr7 (3-49)||(11619340-11619386)
chr7 (3-48)||(47177517-47177562)
chr7 (1-49)||(46139822-46139870)
chr7 (1-48)||(18865202-18865249)
chr7 (3-49)||(45004636-45004682)
chr7 (4-45)||(33552966-33553007)
chr7 (1-41)||(21619295-21619335)
chr7 (8-48)||(22296364-22296404)
chr7 (1-49)||(27863849-27863897)
chr7 (1-49)||(33128627-33128675)
chr7 (1-49)||(38500070-38500118)
[»] chr3 (5 HSPs)
chr3 (3-49)||(3845716-3845762)
chr3 (1-49)||(47132247-47132295)
chr3 (6-49)||(849552-849595)
chr3 (9-49)||(20880347-20880387)
chr3 (1-49)||(46886839-46886887)
[»] chr2 (10 HSPs)
chr2 (4-49)||(26143785-26143830)
chr2 (10-49)||(41812235-41812274)
chr2 (1-48)||(43570297-43570344)
chr2 (1-46)||(26626759-26626804)
chr2 (1-46)||(27695739-27695784)
chr2 (1-49)||(41880644-41880693)
chr2 (1-49)||(15757818-15757866)
chr2 (1-49)||(33981031-33981079)
chr2 (12-48)||(40835435-40835471)
chr2 (1-49)||(41407171-41407219)
[»] chr1 (11 HSPs)
chr1 (4-49)||(45855731-45855776)
chr1 (3-48)||(46423151-46423196)
chr1 (1-50)||(47498985-47499034)
chr1 (1-49)||(17727247-17727295)
chr1 (1-49)||(27820482-27820530)
chr1 (1-49)||(38247324-38247371)
chr1 (3-46)||(27970417-27970460)
chr1 (2-49)||(41195347-41195394)
chr1 (10-48)||(38189656-38189694)
chr1 (10-47)||(33541869-33541906)
chr1 (1-49)||(37473269-37473317)
[»] chr8 (5 HSPs)
chr8 (1-45)||(9956954-9956998)
chr8 (1-48)||(14956447-14956494)
chr8 (2-49)||(40981000-40981047)
chr8 (1-49)||(29819032-29819080)
chr8 (1-49)||(36963497-36963545)
[»] chr6 (3 HSPs)
chr6 (1-49)||(14929604-14929652)
chr6 (3-49)||(6538387-6538433)
chr6 (9-49)||(35069432-35069472)
[»] scaffold0018 (1 HSPs)
scaffold0018 (3-49)||(157977-158023)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 25904366 - 25904537
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacagtaactaagtatcactctccaatacatagtccttaaaattatataaaaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25904366 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacagtaactaagtatcactctccaatacatagtccttaaaattatataaaaacaa 25904465  T
Q  101 ttagtagatcttaatctatatgagttaatgtttttctcaaattttaatcgtccaactcttgcaagtttgaga 172  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25904466 ttagtagatcgtaatctatatgaattaatgtttttctcaaattttaatcgtccaactcttgcaagtttgaga 25904537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 25906598 - 25906650
Alignment:
Q  171 gactgggttgttcaggtgagtcttttgcttctgtttcttgtcttggtgaaagt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25906598 gactgggttgttcaggtgagtcttttgcttctgtttcttgtcttggtgaaagt 25906650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 17204056 - 17204007
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacagt 50  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  17204056 tgataagtgcttgttctataagctgcaaataagttgtttatccaaacagt 17204007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 44863108 - 44863151
Alignment:
Q  5 aagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  44863108 aagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47119087 - 47119134
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||    
T  47119087 tgataagtgcttgtgctataagttgcaaataagttgtttatccaaaca 47119134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45935365 - 45935413
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||| ||||| ||||||| |||||||| ||||||||||||||||||    
T  45935365 tgataagcgcttgagctataagctgcaaataagttgtttatccaaacag 45935413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 49202571 - 49202527
Alignment:
Q  4 taagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||    
T  49202571 taagtgcttgtactataagctgcaaataagttgtttatccaaaca 49202527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27035 - 27083
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||| ||||||||||||| |||||||  || |||||||||||||||    
T  27035 tgataagcgcttgtgctataagctgcaaacaagatgtttatccaaacag 27083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 4212852 - 4212812
Alignment:
Q  9 gcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||| ||| |||| ||||||||||||||||||    
T  4212852 gcttgtgctataagctgaaaataagttgtttatccaaacag 4212812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 27330185 - 27330225
Alignment:
Q  9 gcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||| || ||||| ||||||||||||||||||    
T  27330185 gcttgtgctataagctacaaataagttgtttatccaaacag 27330225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 44797802 - 44797762
Alignment:
Q  9 gcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  44797802 gcttgtgctataagttgcaaataagttgtttatccaaacag 44797762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 40426680 - 40426558
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacagtaactaagtatcactctccaatacatagtccttaaaattatataaaaacaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||    
T  40426680 tgataagtgcttgtgctataagctgcaaatgagttgtttatccaaacagtaactaagtatcactctcctgtacttagtccttaaaagtatataaaaacaa 40426581  T
Q  101 ttagtagatcttaatctatatga 123  Q
    |||||||||||||||||||||||    
T  40426580 ttagtagatcttaatctatatga 40426558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32372542 - 32372495
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  32372542 tgataagtgcttgtgctataagctgcaaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24030554 - 24030601
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||    
T  24030554 tgataagtgcttgtgctataagctgcaaataagctgtttatccaaaca 24030601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 40424341 - 40424299
Alignment:
Q  171 gactgggttgttcaggtgagtcttttgcttctgtttcttgtctt 214  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  40424341 gactgggttgttcaggtgagtc-tttgcttctgtttcttgtctt 40424299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28776903 - 28776855
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||  ||||||| |||||||| ||||||||||||||||||    
T  28776903 tgataagtgcttaggctataagctgcaaataagttgtttatccaaacag 28776855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 3520345 - 3520302
Alignment:
Q  5 aagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||    
T  3520345 aagtgcttgtgctataagctgaaaataagttgtttatccaaaca 3520302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13697911 - 13697962
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacagtaa 52  Q
    |||||| ||||| || ||||| |||||||| |||||||||||||||||||||    
T  13697911 tgataaatgcttatgttataagctgcaaataagttgtttatccaaacagtaa 13697962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7706131 - 7706179
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||  |||||||||||| |||||||| |||||||||| |||||||    
T  7706131 tgataagcacttgtgctataacctgcaaataagttgtttatacaaacag 7706179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 12433530 - 12433570
Alignment:
Q  9 gcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  12433530 gcttgtgttataagctgcaaataagttgtttatccaaacag 12433570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32703590 - 32703638
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||| |||||||||||||| |||||||| |||||||| || ||||||    
T  32703590 tgataaatgcttgtgctataagctgcaaataagttgtttttctaaacag 32703638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 11619340 - 11619386
Alignment:
Q  3 ataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  11619340 ataagtgcttgtgcaataatctgcaaataagttgtttatccaaacag 11619386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 47177562 - 47177517
Alignment:
Q  3 ataagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||    
T  47177562 ataagtgcttatgctataatcagcaaataagttgtttatccaaaca 47177517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46139870 - 46139822
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||||| ||||| |||||||| ||||||||| ||||||||    
T  46139870 tgataagtgcttgtgttataagctgcaaataagttgtttaaccaaacag 46139822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18865202 - 18865249
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    ||||||| | ||||||||||| |||||||| |||||||||||||||||    
T  18865202 tgataagcgtttgtgctataagctgcaaataagttgtttatccaaaca 18865249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 45004682 - 45004636
Alignment:
Q  3 ataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||| |||||||||||||| |||||||| |||| |||||||||||||    
T  45004682 ataattgcttgtgctataaactgcaaataagttatttatccaaacag 45004636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 33552966 - 33553007
Alignment:
Q  4 taagtgcttgtgctataatctgcaaatgagttgtttatccaa 45  Q
    ||||||||||||| |||| |||||||| ||||||||||||||    
T  33552966 taagtgcttgtgcaataagctgcaaataagttgtttatccaa 33553007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21619335 - 21619295
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttat 41  Q
    ||||||||||||||||||||| |||||||| || |||||||    
T  21619335 tgataagtgcttgtgctataagctgcaaattagatgtttat 21619295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 22296364 - 22296404
Alignment:
Q  8 tgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  22296364 tgcttgtgctataagctgcaaataagttgtttatctaaaca 22296404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27863849 - 27863897
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||  |||||||||||| || ||||| ||||||||||||||||||    
T  27863849 tgataagcacttgtgctataagctacaaataagttgtttatccaaacag 27863897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33128675 - 33128627
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||| ||||||| ||| |||||||| || |||||||||||||||    
T  33128675 tgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaacag 33128627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38500070 - 38500118
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||| ||||||||||||| |||||||| || |||||||| ||||||    
T  38500070 tgataagcgcttgtgctataaactgcaaataagctgtttatctaaacag 38500118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 3845716 - 3845762
Alignment:
Q  3 ataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||    
T  3845716 ataagtgcttgtgctatgaactgcaaataagttgtttatccaaacag 3845762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47132295 - 47132247
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||||||||||||||||  || |||| ||||||||||||||||||    
T  47132295 tgataagtgcttgtgctataaggtgaaaataagttgtttatccaaacag 47132247  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 849595 - 849552
Alignment:
Q  6 agtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||    
T  849595 agtgtttgtgctataagctgcaaataagttgtttatccaaacag 849552  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 20880387 - 20880347
Alignment:
Q  9 gcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||| |||||||| |||||| |||||||||||    
T  20880387 gcttgtgctataaactgcaaataagttgtctatccaaacag 20880347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46886839 - 46886887
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||  ||| |||||||| |||||||| ||||||||||||||||||    
T  46886839 tgataagcacttatgctataagctgcaaataagttgtttatccaaacag 46886887  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 26143785 - 26143830
Alignment:
Q  4 taagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||||    
T  26143785 taagtgcttgtgttataaactgcaaataagttgtttatccaaacag 26143830  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 41812235 - 41812274
Alignment:
Q  10 cttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  41812235 cttgtgctataaactgcaaataagttgtttatccaaacag 41812274  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43570344 - 43570297
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    ||||||||||||||||||||| |||||||| || |||||| |||||||    
T  43570344 tgataagtgcttgtgctataagctgcaaataagctgtttacccaaaca 43570297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26626804 - 26626759
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaa 46  Q
    ||||||| |||| |||||||| |||||||| |||||||||||||||    
T  26626804 tgataagagcttatgctataagctgcaaataagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27695739 - 27695784
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaa 46  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||    
T  27695739 tgataagtgtttgtgctataagctacaaataagttgtttatccaaa 27695784  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41880644 - 41880693
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaa-tgagttgtttatccaaacag 49  Q
    ||||||| ||||||||||||| ||||||| | ||||||||||||||||||    
T  41880644 tgataagcgcttgtgctataagctgcaaagtaagttgtttatccaaacag 41880693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15757818 - 15757866
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||| ||||||||||||| ||| |||| || |||||||||||||||    
T  15757818 tgataagcgcttgtgctataagctgaaaataagctgtttatccaaacag 15757866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33981079 - 33981031
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||||||||||| ||| ||||||| |||||| | ||||||    
T  33981079 tgataagtgcttgtgctataagctgaaaatgaggtgtttaccgaaacag 33981031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 40835471 - 40835435
Alignment:
Q  12 tgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    |||||||||| |||||||| |||||||||||||||||    
T  40835471 tgtgctataagctgcaaataagttgtttatccaaaca 40835435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41407219 - 41407171
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||| ||||||||||||| |||||||  || |||||||||||||||    
T  41407219 tgataagcgcttgtgctataagctgcaaacaagctgtttatccaaacag 41407171  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 45855776 - 45855731
Alignment:
Q  4 taagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||||||||||||| |||||||| ||||| ||||||||||||    
T  45855776 taagtgcttgtgctataagctgcaaataagttggttatccaaacag 45855731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 46423196 - 46423151
Alignment:
Q  3 ataagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||    
T  46423196 ataagtgcttgtgttataagctgcaaataagttgtttatccaaaca 46423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 47498985 - 47499034
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacagt 50  Q
    |||||||  |||||||||||| |||||||| |||||||||||||||||||    
T  47498985 tgataagcacttgtgctataagctgcaaataagttgtttatccaaacagt 47499034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17727247 - 17727295
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||||||||||| || || || ||||||||||||||||||    
T  17727247 tgataagtgcttgtgctataagctacacataagttgtttatccaaacag 17727295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27820482 - 27820530
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||| |||| |||||||| |||||||| ||||||||||||||||||    
T  27820482 tgataagcgcttatgctataagctgcaaataagttgtttatccaaacag 27820530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38247371 - 38247324
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||||||||||| |||||||| || |||||||||||||||    
T  38247371 tgataagtgcttgtgctataagctgcaaat-agctgtttatccaaacag 38247324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 27970417 - 27970460
Alignment:
Q  3 ataagtgcttgtgctataatctgcaaatgagttgtttatccaaa 46  Q
    |||||||||| |||||||| |||||||| |||||||||||||||    
T  27970417 ataagtgcttctgctataagctgcaaataagttgtttatccaaa 27970460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 41195347 - 41195394
Alignment:
Q  2 gataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||| ||||||||||||| |||||||| |||| |||||||||||||    
T  41195347 gataagcgcttgtgctataagctgcaaataagttatttatccaaacag 41195394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 38189694 - 38189656
Alignment:
Q  10 cttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  38189694 cttgtgctataaactgcaaataagttgtttatccaaaca 38189656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 33541869 - 33541906
Alignment:
Q  10 cttgtgctataatctgcaaatgagttgtttatccaaac 47  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  33541869 cttgtgctataaactgcaaataagttgtttatccaaac 33541906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37473317 - 37473269
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||  ||||||| |||| |||||||| ||||||||||||||||||    
T  37473317 tgataagaacttgtgcaataagctgcaaataagttgtttatccaaacag 37473269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9956954 - 9956998
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaa 45  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||    
T  9956954 tgataagtgcttgtgctataagctacaaataagttgtttatccaa 9956998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14956447 - 14956494
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaaca 48  Q
    ||||||| | ||||||||||| |||||||| |||||||||||||||||    
T  14956447 tgataagcgattgtgctataagctgcaaataagttgtttatccaaaca 14956494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 40981047 - 40981000
Alignment:
Q  2 gataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||| ||||||||||||| |||||||| || |||||||||||||||    
T  40981047 gataagcgcttgtgctataagctgcaaataagctgtttatccaaacag 40981000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29819032 - 29819080
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||  ||| |||||||| |||||||| ||||||||||||||||||    
T  29819032 tgataagcccttttgctataagctgcaaataagttgtttatccaaacag 29819080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36963497 - 36963545
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||| ||||||||||||| |||||||| | ||||||| ||||||||    
T  36963497 tgataagcgcttgtgctataagctgcaaataaattgtttacccaaacag 36963545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14929652 - 14929604
Alignment:
Q  1 tgataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    |||||||  |||||||||||| ||||||||||||||||| |||||||||    
T  14929652 tgataagcacttgtgctataagctgcaaatgagttgtttgtccaaacag 14929604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 6538433 - 6538387
Alignment:
Q  3 ataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||||||||| |||||||| || | |||||||||||||    
T  6538433 ataagtgcttgtgctataagctgcaaataagctatttatccaaacag 6538387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 35069472 - 35069432
Alignment:
Q  9 gcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||||||||| |||||||| ||||||||||| ||||||    
T  35069472 gcttgtgctataagctgcaaataagttgtttatcaaaacag 35069432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 158023 - 157977
Alignment:
Q  3 ataagtgcttgtgctataatctgcaaatgagttgtttatccaaacag 49  Q
    ||||||| ||||||||||| |||||||| || |||||||||||||||    
T  158023 ataagtgtttgtgctataagctgcaaataagctgtttatccaaacag 157977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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