View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3274_low_3 (Length: 402)
Name: NF3274_low_3
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3274_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 14726964 - 14727358
Alignment:
| Q |
1 |
catattgtcttttgacaagacacgattgtgcagtaatttccacaaaaaagctgcaacttttgagggtgcagcagaatgccaaatactaccaagtaccaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14726964 |
catattgtcttttgacaagacacgattgtgcagtaatttccacaaaaaagctgcaacttttgagggtgcagcagaattccaaatactaccaagtaccaaa |
14727063 |
T |
|
| Q |
101 |
cacatgagaatcagaagtgtccaaactgatttcattaagaaaaaccggagccaataaatgatgaacgaaaaagagccacccgaacaacctcctccgtgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14727064 |
cacatgagaatcagaagtgtccaaactgatttcattaagaaaaaccggagccaataaatgatgaacgaaaaagagccacccgaacaacctcctccgtgaa |
14727163 |
T |
|
| Q |
201 |
caaacactaccaaacacatctggaccccaaacccaaacatcctcctccgtggataaatgcactgcctgcagtaaagacaataagacctgcaaaattctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14727164 |
caaacactaccaaacacatctggaccccaaacccaaacatcctcctccgtggataaatgcactgcctgcagtaaagacaataagacctgcaaaattctca |
14727263 |
T |
|
| Q |
301 |
ttctcccattcgaacaacctcctatgccaagtgaacgaccacctccaaacctcaccttccctaattctcacctcgctcactgtacccttcatctc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14727264 |
ttctcccattcgaacaacctcctatgccaagtgaacgaccacctccaaacctcaccttccctaattctcacctcgctcactgtacccttcttctc |
14727358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 17596546 - 17596155
Alignment:
| Q |
1 |
catattgtcttttgacaagacacgattgtgcagtaatttccacaaaaaagctgcaacttttgagggtgcagcagaatgccaaatactaccaagtaccaaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17596546 |
catattgtcttttgacaagacacgattgtgcagtaacttccacaaaaaagctgcaacttttgagggtgcagcagaattccaaatactaccaagtaccaaa |
17596447 |
T |
|
| Q |
101 |
cacatgagaatcagaagtgtccaaactgatttcattaagaaaaaccggagccaataaatgatgaacgaaaaagagccacccgaacaacctcctccgtgaa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| | |
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| T |
17596446 |
cacatgagaatcagaagtgtccaaactgatttcattaagaaaaactggagccaataaatgataaccgaaaaagagccacccgaacaacctcctccgtgga |
17596347 |
T |
|
| Q |
201 |
caaacactaccaaacacatctggaccccaaacccaaacatcctcctccgtggataaatgcactgcctgcagtaaagacaataagacctgcaaaattctca |
300 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17596346 |
caaacactactaaacacatttggaccccaaacccaaacatcctcctccatggataaatgcactgcctgcagtaaagacaataagacctgcaaaattctca |
17596247 |
T |
|
| Q |
301 |
ttctcccattcgaacaacctcctatgccaagtgaacgaccacctccaaacctcaccttccctaattctcacctcgctcactgtacccttcat |
392 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17596246 |
ttctcccattcaaacaacctcctatgccaagtgaacgaccacctccaaacctcaccttccctcattctcacctcgctcactgtacccttcat |
17596155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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