View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3274_low_7 (Length: 298)

Name: NF3274_low_7
Description: NF3274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3274_low_7
NF3274_low_7
[»] chr5 (4 HSPs)
chr5 (106-290)||(28385569-28385753)
chr5 (106-290)||(12540920-12541104)
chr5 (1-57)||(12540815-12540871)
chr5 (15-61)||(28385478-28385524)
[»] chr7 (2 HSPs)
chr7 (109-281)||(3417296-3417468)
chr7 (1-57)||(3417520-3417576)
[»] chr2 (5 HSPs)
chr2 (106-290)||(13440435-13440619)
chr2 (106-288)||(13448598-13448780)
chr2 (108-256)||(13455071-13455219)
chr2 (1-55)||(13448493-13448547)
chr2 (1-57)||(13454964-13455020)
[»] chr4 (5 HSPs)
chr4 (111-185)||(48974349-48974423)
chr4 (106-183)||(48958382-48958459)
chr4 (106-174)||(48912218-48912286)
chr4 (1-52)||(48965459-48965510)
chr4 (129-174)||(48965587-48965632)
[»] scaffold0536 (1 HSPs)
scaffold0536 (106-174)||(6384-6452)
[»] chr8 (1 HSPs)
chr8 (106-183)||(12641345-12641422)
[»] chr6 (1 HSPs)
chr6 (29-57)||(12483454-12483482)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 106 - 290
Target Start/End: Original strand, 28385569 - 28385753
Alignment:
Q  106 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttataagagaaatggtgaatgcgaccaagagatac 205  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||  ||||  |||| | |||     
T  28385569 caggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatat 28385668  T
Q  206 gtacacaacggagttaactcgctgtgagttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 290  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28385669 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactcttgtttcccttctctgct 28385753  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 290
Target Start/End: Original strand, 12540920 - 12541104
Alignment:
Q  106 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttataagagaaatggtgaatgcgaccaagagatac 205  Q
    ||||||||||||||||||||||||||||   | |||||| ||| || |||||||||||||||||||| | | ||||||| |  ||||  |||| | |||     
T  12540920 caggaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatat 12541019  T
Q  206 gtacacaacggagttaactcgctgtgagttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 290  Q
    |||||| || ||||||||| ||||||||||||||||| | ||| |||||||||||||| || ||| ||| |||||| || |||||    
T  12541020 gtacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgct 12541104  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12540815 - 12540871
Alignment:
Q  1 aacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggca 57  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  12540815 aacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcggca 12540871  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 28385478 - 28385524
Alignment:
Q  15 aaacccttctttccaatgtttctctcctcaaatcccttcggcagcca 61  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  28385478 aaacccttctttccaatgtttctctcctcaaatccctttggcagcca 28385524  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 109 - 281
Target Start/End: Complemental strand, 3417468 - 3417296
Alignment:
Q  109 gaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttataagagaaatggtgaatgcgaccaagagatacgta 208  Q
    ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||||||| ||  | ||  |||| | ||| |||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgta 3417369  T
Q  209 cacaacggagttaactcgctgtgagttgagccagttcaggcactcgtgctcgctcacatcactctcgtttccc 281  Q
    ||  || ||||||||| | ||||||||||||||   ||||||||| ||||| ||| || ||| ||||||||||    
T  3417368 caacactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttccc 3417296  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3417576 - 3417520
Alignment:
Q  1 aacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417576 aacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggca 3417520  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 106 - 290
Target Start/End: Original strand, 13440435 - 13440619
Alignment:
Q  106 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttataagagaaatggtgaatgcgaccaagagatac 205  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||| |||||||| ||  ||||  |||| | |||     
T  13440435 caggaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatat 13440534  T
Q  206 gtacacaacggagttaactcgctgtgagttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 290  Q
    |||||  || |||||||||  || ||||| ||||||  ||| ||| ||||||  | ||||||||| ||| |||||| ||||||||    
T  13440535 gtacaacaccgagttaactttctctgagtcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccctctctgct 13440619  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 288
Target Start/End: Original strand, 13448598 - 13448780
Alignment:
Q  106 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttataagagaaatggtgaatgcgaccaagagatac 205  Q
    |||||||||||||||||||||||||||| ||||||||||| || || || ||||| ||||||||||||| ||| |||| ||  ||||  |||| | |||     
T  13448598 caggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatat 13448697  T
Q  206 gtacacaacggagttaactcgctgtgagttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctg 288  Q
    |||||  || |||||||||| || ||| | ||||||  |||||| ||||||| |  ||||| ||| ||| |||||| ||||||    
T  13448698 gtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctg 13448780  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 256
Target Start/End: Original strand, 13455071 - 13455219
Alignment:
Q  108 ggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttataagagaaatggtgaatgcgaccaagagatacgt 207  Q
    ||||||||||||||||| || ||||||| |||||||| || ||| || ||||||||||||||||||| |||  |||  |  ||||  |||| | ||| ||    
T  13455071 ggaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgt 13455170  T
Q  208 acacaacggagttaactcgctgtgagttgagccagttcaggcactcgtg 256  Q
    |||  || |||||||||| || |||||  |||||| |||||||||||||    
T  13455171 acaatactgagttaactctctttgagtcaagccagctcaggcactcgtg 13455219  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13448493 - 13448547
Alignment:
Q  1 aacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgg 55  Q
    ||||||||| ||||||||||||||| || || |||||||| ||||||||||||||    
T  13448493 aacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcgg 13448547  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13454964 - 13455020
Alignment:
Q  1 aacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggca 57  Q
    ||||||||| |||||||||||| ||  | |||||| |||| ||||||||||||||||    
T  13454964 aacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggca 13455020  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 48974349 - 48974423
Alignment:
Q  111 acaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttataagagaaatgg 185  Q
    ||||||||||||||| ||||||| ||||||||||||||||  ||||||||||| | ||| |||| || |||||||    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatgg 48974423  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 48958382 - 48958459
Alignment:
Q  106 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttataagagaaat 183  Q
    |||||||||||||||  |||  ||||||||||||||||||  | |||||||||||||| |||||||||| ||| ||||    
T  48958382 caggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaat 48958459  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 48912286 - 48912218
Alignment:
Q  106 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttat 174  Q
    ||||||||||||||||||||  |||||  |||||||| ||  |||||||||||||||| ||||||||||    
T  48912286 caggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttat 48912218  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48965459 - 48965510
Alignment:
Q  1 aacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 52  Q
    |||||||||  ||||||||||||||||||||||||||||| || ||||||||    
T  48965459 aacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 48965587 - 48965632
Alignment:
Q  129 tgacctgatgcttctattgcgcacgcaatctcatatagttgtttat 174  Q
    ||||| |||||||||||||| |||||||||||||| || |||||||    
T  48965587 tgacccgatgcttctattgcacacgcaatctcataaagctgtttat 48965632  T

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Target: scaffold0536 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 6452 - 6384
Alignment:
Q  106 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttat 174  Q
    ||||||||||||||||||||  |||||| |||||||||||  | || |||||||| || ||||||||||    
T  6452 caggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttat 6384  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 12641422 - 12641345
Alignment:
Q  106 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttataagagaaat 183  Q
    |||||||||||||||  |||  |||||||||   ||||||| ||| ||||||||| || |||||||||| ||||||||    
T  12641422 caggaacaacccatacaaattcgtgacctgaattttctattccgctcgcaatctcgtaaagttgtttatcagagaaat 12641345  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 12483482 - 12483454
Alignment:
Q  29 aatgtttctctcctcaaatcccttcggca 57  Q
    |||||||||||||||||||||||||||||    
T  12483482 aatgtttctctcctcaaatcccttcggca 12483454  T

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