View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3275_high_2 (Length: 449)
Name: NF3275_high_2
Description: NF3275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3275_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Complemental strand, 4353506 - 4353101
Alignment:
| Q |
20 |
gcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| | |
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| T |
4353506 |
gcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtccttccaaatccgggaagtgccggggaagctt |
4353407 |
T |
|
| Q |
120 |
cgacaatcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtaca |
219 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||| |
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| T |
4353406 |
cgacaattacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagcaca |
4353307 |
T |
|
| Q |
220 |
cgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4353306 |
cgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtca |
4353207 |
T |
|
| Q |
320 |
ttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtaatggcttttccggcaagcttgctacggcgtttgaccatcatgttga |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4353206 |
ttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcaagctt-ctacggcgtttgaccatcatgttga |
4353108 |
T |
|
| Q |
420 |
ggtccat |
426 |
Q |
| |
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||||||| |
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| T |
4353107 |
ggtccat |
4353101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Original strand, 4358764 - 4359170
Alignment:
| Q |
20 |
gcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcct |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| | |
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| T |
4358764 |
gcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtccttccaaatccgggaagtgccggggaagctt |
4358863 |
T |
|
| Q |
120 |
cgacaatcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtaca |
219 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||| |
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| T |
4358864 |
cgacaattacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagcaca |
4358963 |
T |
|
| Q |
220 |
cgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4358964 |
cgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtca |
4359063 |
T |
|
| Q |
320 |
ttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtaatggcttttccggcaagcttgctacggcgtttgaccatcatgttga |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||| |
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| T |
4359064 |
ttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttga |
4359163 |
T |
|
| Q |
420 |
ggtccat |
426 |
Q |
| |
|
||||||| |
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|
| T |
4359164 |
ggtccat |
4359170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 66 - 426
Target Start/End: Complemental strand, 4350083 - 4349714
Alignment:
| Q |
66 |
tcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagcttt |
165 |
Q |
| |
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|||||||||| | | ||||||| |||| | | ||||| || |||| |||||||| | ||||| ||||||||||||||||| |||| |||||||| || |
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|
| T |
4350083 |
tcaactgcctggtcataggagttcgtcgagaaccggggagcaccggggaagcctcacctatcacctcattattgtttaccattttctctaacacagcctt |
4349984 |
T |
|
| Q |
166 |
aaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttat---------gacgcttgttgtttagggcaaat |
256 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| | | || |||||||| | | |||| |
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| T |
4349983 |
aaccgcattaacggtaacaatgtcatcgtcttgtgtgagaggcgcgtgagcacacgtgaagaagtggttgttgcggtggcgtttgttgttaaatgaaaat |
4349884 |
T |
|
| Q |
257 |
ttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgat |
356 |
Q |
| |
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||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
4349883 |
ttgtatttaggggtgttgctacagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtggtgat |
4349784 |
T |
|
| Q |
357 |
gaaacatgaggttggtaatggcttttccggcaagcttgctacggcgtttgaccatcatgttgaggtccat |
426 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| ||| |||| |||||||||||||||||||| |
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|
| T |
4349783 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccat |
4349714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 426
Target Start/End: Original strand, 43475430 - 43475539
Alignment:
| Q |
323 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtaatggcttttccggcaagcttgctacggcgtttgaccatcatgt |
416 |
Q |
| |
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||||||||||||||||||||||| |||| ||| ||| ||||| || |||| ||||||||||||||| |||||||| |||||||||| |||||||| |
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| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
|
| Q |
417 |
tgaggtccat |
426 |
Q |
| |
|
| ||| |||| |
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| T |
43475530 |
ttaggcccat |
43475539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 426
Target Start/End: Original strand, 43486091 - 43486158
Alignment:
| Q |
359 |
aacatgaggttggtaatggcttttccggcaagcttgctacggcgtttgaccatcatgttgaggtccat |
426 |
Q |
| |
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||||| || |||| |||||||||||||||||||||||| |||||||||| ||||||||| ||| |||| |
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|
| T |
43486091 |
aacattagattggcaatggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccat |
43486158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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