View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3275_high_4 (Length: 256)
Name: NF3275_high_4
Description: NF3275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3275_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 31009127 - 31009377
Alignment:
| Q |
1 |
cttctgcaatcaacaaccaatctccatctgcaggagaagcacacaacacaaaaatggggtatgtagaaacaacctcatcacaactacacacccctcttct |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31009127 |
cttctgcaatcaacaatcaatctacatctgcagaagaagcacacaacacaaaaatggggtatgtagaaacaacctcatcacaactacacacccctcttct |
31009226 |
T |
|
| Q |
101 |
ttctgaccaaccccctctgtcctcaaaatccaaaacctttgcaaacctcttcattgcaattgtaggtgcaggtgttcttggtctcccttatactttcacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31009227 |
ttctgaccaaccccctctgtcctcaaaatccaaaacctttgcaaacctcttcattgcaattgtaggtgcaggtgttcttggtctcccttatactttcacg |
31009326 |
T |
|
| Q |
201 |
aaaacaggttggattatggggttgcttatgcttttctctgtttcatctctc |
251 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31009327 |
aaaacaggttggatcatggggttgcttatgcttttctctgtttcatttctc |
31009377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University