View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3275_high_6 (Length: 251)
Name: NF3275_high_6
Description: NF3275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3275_high_6 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 2912456 - 2912692
Alignment:
| Q |
15 |
gacaaggtaaaacgtgctgaagagtctcttaggactgtcatgtacttgagctgctggggtccaaattgatataagaaatccatgcatgcatgtttgaaat |
114 |
Q |
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| T |
2912456 |
gacaaggtaaaacgtgctgaagagtctcttaggactgtcatgtacttgagctgctggggtccaaattgatataagaaatccatgcatgcatgtttgaaat |
2912555 |
T |
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| Q |
115 |
tctattttgtagcttcggaatctatgtaaaagctttgtaaatctatctatctatatctatgtataaacctttacaattattgcatcaatgattataagtg |
214 |
Q |
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| T |
2912556 |
tctattttgtagcttcggaatctatgtaaaagctttgtaaatctatctatctatatctatgtataaacctttacaattattgcatcaatgattataagtg |
2912655 |
T |
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| Q |
215 |
tctggaccgagttagttttatgattatgaatttataa |
251 |
Q |
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| T |
2912656 |
tctggaccgagttagttttatgattatgaatttataa |
2912692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 38025146 - 38025194
Alignment:
| Q |
36 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
84 |
Q |
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| T |
38025146 |
gagtctctaaggactgtcatgtacttgagctgctggggtcctaattgat |
38025194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 38031886 - 38031934
Alignment:
| Q |
36 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
84 |
Q |
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| T |
38031886 |
gagtctttgaggactgtcatgtacttgagctgctggggtcctaattgat |
38031934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 38003635 - 38003683
Alignment:
| Q |
36 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
84 |
Q |
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| T |
38003635 |
gagtctttgaggactgtcatgtacttgagctgttggggtcccaattgat |
38003683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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