View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3275_high_9 (Length: 205)

Name: NF3275_high_9
Description: NF3275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3275_high_9
NF3275_high_9
[»] chr1 (3 HSPs)
chr1 (13-178)||(33770901-33771066)
chr1 (16-169)||(33761508-33761664)
chr1 (74-149)||(33768123-33768198)
[»] chr6 (1 HSPs)
chr6 (90-172)||(28130728-28130810)
[»] chr4 (1 HSPs)
chr4 (90-172)||(41242347-41242429)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 33771066 - 33770901
Alignment:
Q  13 aagaatataggacctagaatttctatcgcaagcttctttgtaaactcattatcaaagggtacatccaaggttgttgctccaataaatgaactgttatcag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  33771066 aagaatataggacctagaatttctatcgcaagcttctttgtaaactcattatcaaagggtacatccaaggttgttggtccaataaatgaattgttatcag 33770967  T
Q  113 aagaaaatccagcaatctatagggacactactgtgaatgatttcttgacacattattatgaaaaat 178  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33770966 aagaaaatccaccaatctatagggacactactgtgaatgatttcttggcacattattatgaaaaat 33770901  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 33761664 - 33761508
Alignment:
Q  16 aatataggacctagaatttctatcgcaagcttctttgtaaactcattatcaaaggg---tacatccaaggttgttgctccaataaatgaactgttatcag 112  Q
    ||||| || ||||||||||| || |||||||||||||||||| ||| |||| |||    ||||||||||||||||||||||||||| ||| || ||||||    
T  33761664 aatattggccctagaatttccatagcaagcttctttgtaaacccatcatcagaggaggttacatccaaggttgttgctccaataaaggaattgctatcag 33761565  T
Q  113 aagaaaatccagcaatctatagggacactactgtgaatgatttcttgacacattatt 169  Q
    ||||||||||| |||||||||||||||||||| |||| ||  ||||| |||||||||    
T  33761564 aagaaaatccaccaatctatagggacactactttgaaagaagtcttggcacattatt 33761508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 33768198 - 33768123
Alignment:
Q  74 catccaaggttgttgctccaataaatgaactgttatcagaagaaaatccagcaatctatagggacactactgtgaa 149  Q
    ||||||||||  ||| ||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||||||    
T  33768198 catccaaggtccttggtccaataaaggaattgttatcagaagaaaatccggcaatctatagggatactactgtgaa 33768123  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 28130728 - 28130810
Alignment:
Q  90 tccaataaatgaactgttatcagaagaaaatccagcaatctatagggacactactgtgaatgatttcttgacacattattatg 172  Q
    ||||||||| ||| |||||||||||||||| ||  |||||||||| || | |||| |||| ||  |||||||| |||||||||    
T  28130728 tccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaaatcttgacaaattattatg 28130810  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 41242347 - 41242429
Alignment:
Q  90 tccaataaatgaactgttatcagaagaaaatccagcaatctatagggacactactgtgaatgatttcttgacacattattatg 172  Q
    ||||||||| ||| |||||||||||||||| ||  |||||||||| || | |||| |||| ||  |||||||| |||||||||    
T  41242347 tccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaaatcttgacaaattattatg 41242429  T

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