View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3275_low_1 (Length: 454)
Name: NF3275_low_1
Description: NF3275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3275_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 28560477 - 28560032
Alignment:
| Q |
1 |
gatgtaaccttaggcctccacttgactggtaaacttatgagaatcttgttaacaggatccttagaagaatagcttttgtcaagtacatgcattctagata |
100 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28560477 |
gatgtaaccttgggcctccacttgactagtaaacttatgagaatcttgttaacatgatccttagaagaatagcttttgtcaagtacatgcattctagata |
28560378 |
T |
|
| Q |
101 |
tcaaaacatgaaacctagagaacatggttttcaatatcttcatcttcctttatcttctgggtttcatattgtggcactagcaaattggccattgcctcct |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
28560377 |
tcaaaacatgaaacctagagaacatggttttcgatatcttcatcttcctttatcttcagggtttcataccgtggcactagcaaattggccattgcctcct |
28560278 |
T |
|
| Q |
201 |
tgatttgctaatttccttcatatgtagtataaagagcatcaaacatactcttaggagtagatttatcaacaatcttgttgaattccttgaattccaaaac |
300 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28560277 |
tgatttgctaatttccttcatatgtagcatagagagcatcaaacgtactcttaggagtagatttatcaacaatcttgttgaattccttgaattccaaaac |
28560178 |
T |
|
| Q |
301 |
attcacctaaatgtttctcgctttgtgatgctttttgtattccttcttttcatcagtagtcaaacacttcttgtttacagctttaccatctttgttcaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28560177 |
attcacctaaatgtttctcgctttgtgatgctttttgtattccttcttttcatccgtagtcaaacacttcttgtttattgctttaccatctttgttcaca |
28560078 |
T |
|
| Q |
401 |
acaacagttgtgccatcttcaatgaaatcccaaatgtcttcttctc |
446 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28560077 |
acatcagttgtgccatcttcaatgaaatcccaaatgtcttcatctc |
28560032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 3 - 353
Target Start/End: Complemental strand, 30343370 - 30343015
Alignment:
| Q |
3 |
tgtaaccttaggcctccacttgactggtaaacttatgagaatcttgttaacaggatccttagaagaatagcttttgtcaagtacatgcattctagatatc |
102 |
Q |
| |
|
||||||||| || ||||||||||| |||||||| | ||||||||| |||| ||||||||| |||||| || ||||||||||| ||||| | ||||| | |
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| T |
30343370 |
tgtaaccttgggtatccacttgacttgtaaacttctatgaatcttgtaaacatgatccttagtagaataactcttgtcaagtacttgcatgccagatacc |
30343271 |
T |
|
| Q |
103 |
aaa-------acatgaaacctagagaacatggttttcaatatcttcatcttcctttatcttctgggtttcatattgtggcactagcaaattggccattgc |
195 |
Q |
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| | || |||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||||| || ||||||| | |||||| | | |
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| T |
30343270 |
atataccagaacttgaaacctggagaacatggttta-aatatcttcatcttccttcatcttgaaggtttcatactgatgcactagaagattggctttcac |
30343172 |
T |
|
| Q |
196 |
ctccttgatttgctaatttccttcatatgtagtataaagagcatcaaacatactcttaggagtagatttatcaacaatcttgttgaattccttgaattcc |
295 |
Q |
| |
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||| || || |||| |||||||||||| |||| | ||||||||| ||| |||||||| |||||||| |||||| ||||||||| ||||||||||||| |
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| T |
30343171 |
ctctttcatgtgctgatttccttcataagtagcacaaagagcat-aaagatactcttgggagtagaattatcagcaatcttgtctaattccttgaattat |
30343073 |
T |
|
| Q |
296 |
aaaacattcacctaaatgtttctcgctttgtgatgctttttgtattccttcttttcat |
353 |
Q |
| |
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||| |||||||| || ||||| | |||||||||||||||||||||| |||||||||| |
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|
| T |
30343072 |
aaagcattcaccaaattgtttatgactttgtgatgctttttgtattctttcttttcat |
30343015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 23212890 - 23212814
Alignment:
| Q |
16 |
ctccacttgactggtaaacttatgagaatcttgttaacaggatccttagaagaatagcttttgtcaagtacatgcat |
92 |
Q |
| |
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||||||||| | ||||||||| | ||||||||||||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
23212890 |
ctccacttggccggtaaacttttaagaatcttgttaacatgatccttagttatgtagctcttgtcaagtacatgcat |
23212814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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