View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3275_low_6 (Length: 253)
Name: NF3275_low_6
Description: NF3275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3275_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 1738047 - 1738270
Alignment:
| Q |
23 |
tacactactagatctacatacttccattcatgaaattaccaatgactcatttctaaaagaaagctccttttatt-atttttgtttagtttgacttacata |
121 |
Q |
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| T |
1738047 |
tacactactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaagctccttttatttatttttgtttagtttgacttacata |
1738146 |
T |
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| Q |
122 |
accaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggcattattttagtgatggtgattgataactatatatatat |
221 |
Q |
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| T |
1738147 |
accaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggcattattttagtgatggagattgataactatatatatat |
1738246 |
T |
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| Q |
222 |
gcacttcttttccctgcctttgct |
245 |
Q |
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|||||||||||||||||||||||| |
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| T |
1738247 |
gcacttcttttccctgcctttgct |
1738270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 1716647 - 1716829
Alignment:
| Q |
23 |
tacactactagatctacatacttccattcatgaaattaccaatgactcatttctaaaagaaagctccttttatt-atttttgtttagtt----------- |
110 |
Q |
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|||||||||||||||||||| | |||||||||||||| || |||||||||||| ||| ||||||||||||||| |||||||| ||||| |
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| T |
1716647 |
tacactactagatctacatattgtcattcatgaaattatcattgactcatttctgaaataaagctccttttatttatttttgtatagttattattatagc |
1716746 |
T |
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| Q |
111 |
-tgacttacataaccaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggcattatttta |
192 |
Q |
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|| |||||||||||||||||| ||||||| || | |||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
1716747 |
ttgccttacataaccaacatgattgcactttttatttttttttaaaacatgagtgcacttgaaacttcaacgacattatttta |
1716829 |
T |
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