View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3276_high_1 (Length: 573)
Name: NF3276_high_1
Description: NF3276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3276_high_1 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0146 (3 HSPs) |
| | |
|
| [»] scaffold0585 (2 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
| [»] scaffold0203 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 20416078 - 20415665
Alignment:
| Q |
19 |
ggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaagcaaatgaagaagttttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | | | |||| ||||| |||||||||| |
|
|
| T |
20416078 |
ggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctttaactcacgagggaaagcaagaaaatggagaagttttt |
20415979 |
T |
|
| Q |
119 |
tctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcag |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
20415978 |
tctcaacaagtagaaaacagtcatgttctttggaaaaatgattatgtctcaaaatcacaagaagaaaaatttctacatagctcaattcaattttatgcag |
20415879 |
T |
|
| Q |
219 |
gtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatatttt |
318 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20415878 |
gtttggatttgaggtcaaatcctcttgaagagggggagaatgatgagatcaagagatcattaagcatgtggaaggaaacatataaaaaaatgaatatttt |
20415779 |
T |
|
| Q |
319 |
att-catttttaattccaaacaagcatgttattttcctagtaaaataatttggctatt-atacaaatggtcaattattagtactgttatggttttaataa |
416 |
Q |
| |
|
||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
20415778 |
attccttttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattagcacagttatggttctaataa |
20415679 |
T |
|
| Q |
417 |
aataattgacagca |
430 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
20415678 |
aataattggcagca |
20415665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 20417066 - 20417445
Alignment:
| Q |
19 |
ggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaagcaaatgaagaagttttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | | |||||| ||||| |||||||||| |
|
|
| T |
20417066 |
ggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctttaactcacgagggaaaccaagaaaatggagaagttttt |
20417165 |
T |
|
| Q |
119 |
tctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcag |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
20417166 |
tctcaacaagtagaaaacagtcatgttctttggaaaaatgattatgtctcaaaatcacaagaagaaaaatttctacatagctcagttcaattttatgcag |
20417265 |
T |
|
| Q |
219 |
gtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatatttt |
318 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20417266 |
gtttggatttgaggtcaaatcctcttgaagacggggagaatgatgagatcaagagcttattaagcatgtggaaggaaacatataaaaaaatgaatatttt |
20417365 |
T |
|
| Q |
319 |
attca-tttttaattccaaacaagcatgttattttcctagtaaaataatttggctatt-atacaaatggtcaattattag |
396 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
20417366 |
attcattttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaaatggtcaattattag |
20417445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 20418650 - 20418372
Alignment:
| Q |
19 |
ggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaagcaaatgaagaagttttt |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
20418650 |
ggtatgtgtagttaaatgttggggttcttctaatattttgcaatctcctaacctttcttcttcaactcatgaaagaaaccaagcaaatgaagaaattttt |
20418551 |
T |
|
| Q |
119 |
tctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcag |
218 |
Q |
| |
|
||||||| |||| |||||| || ||||||||||||| |||||||| |||| || ||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20418550 |
tctcaactagtaaaaaacaatcatgttctttggaaatatgattatttccctaattcacatgggaaaaaaattctacatcactcacttcaattttatgcag |
20418451 |
T |
|
| Q |
219 |
gtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac |
297 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
20418450 |
gtttagatttgaggtcaaatccttttgaagagggggagaatgatgagatcaaaagttcactaagcatgtggaaggaaac |
20418372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 259 - 492
Target Start/End: Complemental strand, 20420403 - 20420168
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt-aattccaaacaagcatgttattttcctag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
20420403 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaatgaatattttattcattttttaattccaaacaagcatgctattttcctag |
20420304 |
T |
|
| Q |
358 |
taaaataatttggctatta-tacaaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatcttatg |
456 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| || ||||||||| |||||||||||||| ||||| |||| ||| ||||||||| | ||| |
|
|
| T |
20420303 |
taaaataatttggctattaatccaaatggtcaattattagcacagttatggttctaataaaataattggcagcaagttgtgagtaagtgattatttcatg |
20420204 |
T |
|
| Q |
457 |
gagatataattagcccaaggtgctgattcatgttct |
492 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
20420203 |
gagatgtaattatcccaaggtgctgattcatgttct |
20420168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 259 - 403
Target Start/End: Complemental strand, 30519077 - 30518932
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnn-tgaatattttattcatttttaattccaaacaagcatgttattttcctag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30519077 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaaatgaatattttattcatttttaattccaaacaagcatgttattttcctag |
30518978 |
T |
|
| Q |
358 |
taaaataatttggctattatacaaatggtcaattattagtactgtt |
403 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30518977 |
taaaataatttggctattatacgaatggtcaattattagtactgtt |
30518932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 497 - 563
Target Start/End: Complemental strand, 30518932 - 30518866
Alignment:
| Q |
497 |
tcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcagttttgcctttg |
563 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518932 |
tcaaaaatgccaataacatgattaatcacgttggcattatggtggttattgttcagttttgcctttg |
30518866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 492
Target Start/End: Complemental strand, 20415510 - 20415435
Alignment:
| Q |
417 |
aataattgacagcaggttgcaagttagtgattatcttatggagatataattagcccaaggtgctgattcatgttct |
492 |
Q |
| |
|
|||||||| ||||| |||| ||| ||||||||| | |||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
20415510 |
aataattggcagcaagttgtgagtaagtgattatttcatggagatgtaattatcccaaggtgctgattcatgttct |
20415435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 16711786 - 16711746
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
16711786 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
16711746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 259 - 563
Target Start/End: Original strand, 32705629 - 32705939
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnnt--gaatattttattcattttta---attccaaacaagcatgttattttc |
353 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32705629 |
tgatgaaatcaagagctcattaaacatgtggaagaaaacatataaaaaaaaaagaatattttattcatttttattaattccaaacaagcatgttattttc |
32705728 |
T |
|
| Q |
354 |
ctagtaaaataatttggctatta-tacaaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatct |
452 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32705729 |
ctagtaaaataatttggctattaatccaaatggtcaattattagtactgttatggttttaataaaataattggcagcaggttgcaagttagtgattatct |
32705828 |
T |
|
| Q |
453 |
tatggagatataattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcag |
552 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32705829 |
catggagatgtaattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcacgttggcattatggtggttactgttcag |
32705928 |
T |
|
| Q |
553 |
ttttgcctttg |
563 |
Q |
| |
|
|||||| |||| |
|
|
| T |
32705929 |
ttttgcttttg |
32705939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 8105703 - 8105659
Alignment:
| Q |
257 |
aatgatgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
8105703 |
aatgatgtgatcataagttcattaagcatgtggaaggaaacatat |
8105659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 44394130 - 44394170
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
44394130 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
44394170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 47233494 - 47233454
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
47233494 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
47233454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 16346363 - 16346085
Alignment:
| Q |
19 |
ggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaagcaaatgaagaagttttt |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
16346363 |
ggtatgtgtagttaaatgttggggttcttctaatattttgcaatctcctaacctttcttctttaactcatgaaggaaaccaagcaaatgaagaagttttt |
16346264 |
T |
|
| Q |
119 |
tctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcag |
218 |
Q |
| |
|
||||||| ||||||||||| || ||||||||| ||| |||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16346263 |
tctcaactagtagaaaacaatcatgttctttgaaaatatgattatttccctaattcacaagggaaaaaaattctacatcactcacttcaattttatgcag |
16346164 |
T |
|
| Q |
219 |
gtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac |
297 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
16346163 |
gtttagatttgaggtcaaatccttttgaagagggggagaatgatgagatcaaaagttcattaagcatgtggaaggaaac |
16346085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 259 - 492
Target Start/End: Complemental strand, 2310066 - 2309831
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt-aattccaaacaagcatgttattttcctag |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
2310066 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaatgaatattttattcattttttaattccaaacaagcatgctattttcctag |
2309967 |
T |
|
| Q |
358 |
taaaataatttggctatta-tacaaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatcttatg |
456 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||| ||||||||||| ||| |
|
|
| T |
2309966 |
taaaataatttggctattaatccaaatggtcaattattagcactgttatggttctaataaaataattggcagcaggttgtgagtaagtgattatctcatg |
2309867 |
T |
|
| Q |
457 |
gagatataattagcccaaggtgctgattcatgttct |
492 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
2309866 |
gagatgtaattatcccaaagtgctgattcatgttct |
2309831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 17237667 - 17237625
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
17237667 |
tgatgagatcaaaagctcattaagtatgtggaaagaaacatat |
17237625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 35870812 - 35870852
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
35870812 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
35870852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 48266730 - 48266770
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
48266730 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
48266770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 259 - 561
Target Start/End: Complemental strand, 23144967 - 23144661
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt--aattccaaacaagcatgttattttccta |
356 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
23144967 |
tgatgagatcaagagctcattaaacatgtggaaggaaacatataaataa-tgaatattttattcatttttttaattccaaacaagcatgctattttccta |
23144869 |
T |
|
| Q |
357 |
gtaaaataat--ttggctattatac-aaatggtcaattattagtactgttatggttttaataaaataattgacagcaggttgcaagttagtgattatctt |
453 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| || || |||| ||||||||||||||| |
|
|
| T |
23144868 |
gtaaaataatatttggctattaaaccaaatggtcaattattagtattgttatggttttaataaaataatttgcaacaagttgtgagttagtgattatctc |
23144769 |
T |
|
| Q |
454 |
atggagatataattagcccaaggtgctgattcatgttctcatctcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcagt |
553 |
Q |
| |
|
||| |||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| || |||| |||||||| |
|
|
| T |
23144768 |
atgaagatgtaatcagctcaaggtgctgattcatgttctcggctcaaaaaggccaataaaatgattaatcacattggcattatagtagttactgttcagt |
23144669 |
T |
|
| Q |
554 |
tttgcctt |
561 |
Q |
| |
|
|||||||| |
|
|
| T |
23144668 |
tttgcctt |
23144661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 26047981 - 26048058
Alignment:
| Q |
219 |
gtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac |
297 |
Q |
| |
|
|||||||||| ||| |||||| |||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
26047981 |
gtttggattt-agggcaaatcctctttaagagggggagaatgatgaaatcaagagttcactaagcatgtggaaggaaac |
26048058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 20172419 - 20172459
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
20172419 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
20172459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 146 - 294
Target Start/End: Complemental strand, 22063125 - 22062977
Alignment:
| Q |
146 |
ctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcaggtttggatttgaggtcaaatcatcttg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22063125 |
ctttggaaaaatgattatgtcccaaaatcacaaggagaaaaatttctacatagctcacttcaattttatgcaggtttggatttgaggtcaaatcctcttg |
22063026 |
T |
|
| Q |
246 |
aagagggggagaatgatgagatcaagagctcattaagcatgtggaagga |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
22063025 |
aagagggggagaatgatgagatcaagagcttattaaacatgtggaagga |
22062977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 20121055 - 20121091
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaa |
295 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20121055 |
tgatgagatcataagctcattaagcatgtggaaggaa |
20121091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 259 - 403
Target Start/End: Complemental strand, 6051016 - 6050871
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnn-tgaatattttattcatttttaattccaaacaagcatgttattttcctag |
357 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6051016 |
tgatgagatcaaaagctcattaagcatgtggaaggaaacatataaaaaaaatgaatattttattcatttttaattccaaacaagcatgttattttcctag |
6050917 |
T |
|
| Q |
358 |
taaaataatttggctattatacaaatggtcaattattagtactgtt |
403 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6050916 |
taaaataatttggctattagacaaatggtcaattattagtactgtt |
6050871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 23732543 - 23732459
Alignment:
| Q |
146 |
ctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcaggtttggatttga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23732543 |
ctttggaaaaatgattatgtcccaaaatcaaaaggagaaaaatttctacatagctcacttcaattttatgcaggtttggatttga |
23732459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 497 - 563
Target Start/End: Complemental strand, 6050871 - 6050805
Alignment:
| Q |
497 |
tcaaaaaggccaataacatgattaatcacgttggcattatggtggttattgttcagttttgcctttg |
563 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6050871 |
tcaaaaatgccaataacatgattaatcacgttggcattatggtggctattgttcagttttgcctttg |
6050805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 23736393 - 23736358
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaagga |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23736393 |
tgatgagatcaagagctcattaagcatgtggaagga |
23736358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 15408638 - 15408676
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaac |
297 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
15408638 |
tgatgagatcaaaagttcattaagcatgtggaaggaaac |
15408676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 34374 - 34652
Alignment:
| Q |
19 |
ggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaagcaaatgaagaagttttt |
118 |
Q |
| |
|
||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||| ||| | |||||||| |||| | ||||| |||| ||| |
|
|
| T |
34374 |
ggtatgtgtagttaattgttggaattcttctgatatttttaaatctcctaacctttcttctttgagtcatgaagggaaccatgtgaatgatgaagaattt |
34473 |
T |
|
| Q |
119 |
tctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcag |
218 |
Q |
| |
|
|||| ||||| |||| | | || | |||||| |||| | ||||| | ||||||||| ||||||| |||||||| ||||||||| ||| ||||||| |
|
|
| T |
34474 |
cctcatcaagttaaaaaaaattatgagcaatggaaatatgagtttgtccaagaatcacaagaagaaaaatttctacataactcacttccattatatgcag |
34573 |
T |
|
| Q |
219 |
gtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaagagctcattaagcatgtggaaggaaac |
297 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| || ||||| |||||||||||||| |
|
|
| T |
34574 |
gtttggatttgaggacaaattctcttgaagagggggggaatgatgagatcatgagttctttaagtatgtggaaggaaac |
34652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 8660 - 8911
Alignment:
| Q |
19 |
ggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttttttaactcatgaagaacaccaagcaaatgaagaagttttt |
118 |
Q |
| |
|
||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||| ||| | |||||||| |||| | |||||||||| || |
|
|
| T |
8660 |
ggtatgtgtagttaattgttggaattcttctgatatttttaaatctcctaacctttcttctttgagtcatgaagggaaccacgtgaatgaagaagaagtt |
8759 |
T |
|
| Q |
119 |
tctcaacaagtagaaaacagtcgtgttctttggaaaaatgattatgtcccaaaatcacaaggagaaaaaattctacatcactcacttcaattttatgcag |
218 |
Q |
| |
|
|||| ||||| |||| | | || | ||||||||||| | ||||| | ||||| ||| ||||||| |||||||| ||||||||| |||||||| || |
|
|
| T |
8760 |
cctcatcaagttaaaaaaaattatgaccaatggaaaaatgagtttgtccaagaatcataagaagaaaaatttctacataactcacttccattttatgtag |
8859 |
T |
|
| Q |
219 |
gtttggatttgaggtcaaatcatcttgaagagggggagaatgatgagatcaa |
270 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8860 |
gtttggatttgaggtcaaatcctcttgaagaggaggagaatgatgagatcaa |
8911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 5884 - 5926
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
5884 |
tgatgagatcaaaagctcattaagtatgtggaaagaaacatat |
5926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 16532 - 16574
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
16532 |
tgatgagatcaaaagctcattaagtatgtggaaagaaacatat |
16574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 259 - 376
Target Start/End: Complemental strand, 20265143 - 20265026
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcatttttaattccaaacaagcatgttattttcctagt |
358 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20265143 |
tgatgagatcaagagctcgttaagcatgtggaaggaaacatataaaaaaataaatattttattcatttttaattccaaacaaacatgttattttcctagt |
20265044 |
T |
|
| Q |
359 |
aaaataatttggctatta |
376 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20265043 |
aaaataatttggctatta |
20265026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 1393353 - 1393422
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnntgaatattttattcattttt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
1393353 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatataaaaaaatgaatattttatttattttt |
1393422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 14874131 - 14874093
Alignment:
| Q |
257 |
aatgatgagatcaagagctcattaagcatgtggaaggaa |
295 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14874131 |
aatgatgagatcataagctcattaagcatgtggaaggaa |
14874093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 2500315 - 2500275
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
2500315 |
atgagatcaaaagttcactaagcatgtggaaggaaacatat |
2500275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 20036711 - 20036751
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
20036711 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
20036751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 46092774 - 46092814
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
46092774 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
46092814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 53830177 - 53830137
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
53830177 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
53830137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0585 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0585
Description:
Target: scaffold0585; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 259 - 391
Target Start/End: Complemental strand, 1590 - 1455
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatatnnnnnnn--tgaatattttattcattttt-aattccaaacaagcatgttattttcct |
355 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
1590 |
tgataagatcaagagctcattaagcatgtggaaggaaacatacaaaaaacaatgtttattttattcattttttaattccaaacaagcatgctattttcct |
1491 |
T |
|
| Q |
356 |
agtaaaataatttggctattatacaaatggtcaatt |
391 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1490 |
agtaaaataatttggctattaatccaatggtcaatt |
1455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0585; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 3943 - 3864
Alignment:
| Q |
313 |
tattttattcattttt-aattccaaacaagcatgttattttcctagtaaaataatttggctattatacaaatggtcaatt |
391 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
3943 |
tattttattcattttttaattccaaacaagcatgctattttcctagtaaaataatttggctattaatccaatggtcaatt |
3864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 136051 - 136093
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
136051 |
tgatgagatcaagagctcattaagcatgtggaaggaaacatat |
136093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 22581 - 22621
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
22581 |
atgagatcaagaggtcactaagcatgtggaaggaaacatat |
22621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 54536 - 54574
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaaac |
297 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
54536 |
tgatgagatcaaaagttcattaagcatgtggaaggaaac |
54574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0203 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0203
Description:
Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 2375 - 2339
Alignment:
| Q |
259 |
tgatgagatcaagagctcattaagcatgtggaaggaa |
295 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2375 |
tgatgagatcataagctcattaagcatgtggaaggaa |
2339 |
T |
|
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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 34596115 - 34596159
Alignment:
| Q |
257 |
aatgatgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||| ||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
34596115 |
aatgatgtgatcatgaactcattaagtatgtggaaggaaacatat |
34596159 |
T |
|
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 36991517 - 36991557
Alignment:
| Q |
261 |
atgagatcaagagctcattaagcatgtggaaggaaacatat |
301 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
36991517 |
atgagatcaagagttcactaaacatgtggaaggaaacatat |
36991557 |
T |
|
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